POPTR_0013s00350 (Populus trichocarpa)
MADS box

TF Information

Pfam ID Interpro ID Gene ID CIS-BP ID Sequence source Animal TF db
PF00319 (SRF-TF) IPR002100 POPTR_0013s00350 T255863_2.00 Ensembl (2018-Dec-8) Link out

Directly determined binding motifs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
No direct experiments

Motifs from related TFs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
AGL80
M06994_2.00 		Arabidopsis thaliana
TCACCA
TGGTGA		 Dap-seq
OMalley et al.(2016)
FEM111_col_a 		0.854 0.854
For this family, TFs with SR scores > 0.700 will likely have a similar motif

DNA Binding Domains

Protein ID Domain From To Sequence
POPTR_0013s00350.1 MADS box 10 58

Links

Other MADS box family TFs
Other Populus trichocarpa TFs

140 Related TFs

Name Species Gene ID Motif Evidence SR
Score		 Action
evm.TU.contig_24608 Carica papaya evm.TU.contig_24608 I 0.708
evm.TU.contig_25253.2 Carica papaya evm.TU.contig_25253.2 N 0.702
evm.TU.contig_27586 Carica papaya evm.TU.contig_27586 I 0.864
evm.TU.contig_28089 Carica papaya evm.TU.contig_28089 I 0.000
evm.TU.contig_28448.1 Carica papaya evm.TU.contig_28448.1 N 0.000
evm.TU.contig_31147 Carica papaya evm.TU.contig_31147 I 0.729
evm.TU.contig_33457.2 Carica papaya evm.TU.contig_33457.2 I 0.778
evm.TU.contig_35009 Carica papaya evm.TU.contig_35009 I 0.727
evm.TU.contig_36181 Carica papaya evm.TU.contig_36181 I 0.767
evm.TU.contig_37084 Carica papaya evm.TU.contig_37084 I 0.000
evm.TU.contig_38760 Carica papaya evm.TU.contig_38760 N 0.000
evm.TU.contig_40485 Carica papaya evm.TU.contig_40485 I 0.773
evm.TU.contig_43368 Carica papaya evm.TU.contig_43368 I 0.000
evm.TU.contig_44957 Carica papaya evm.TU.contig_44957 I 0.778
evm.TU.supercontig_100.14 Carica papaya evm.TU.supercontig_100.14 N 0.000
evm.TU.supercontig_1256.1 Carica papaya evm.TU.supercontig_1256.1 N 0.000
evm.TU.supercontig_185.11 Carica papaya evm.TU.supercontig_185.11 I 0.778
evm.TU.supercontig_185.12 Carica papaya evm.TU.supercontig_185.12 I 0.000
evm.TU.supercontig_185.2 Carica papaya evm.TU.supercontig_185.2 I 0.750
evm.TU.supercontig_185.7 Carica papaya evm.TU.supercontig_185.7 I 0.738
evm.TU.supercontig_265.3 Carica papaya evm.TU.supercontig_265.3 N 0.000
evm.TU.supercontig_265.6 Carica papaya evm.TU.supercontig_265.6 N 0.000
evm.TU.supercontig_30.164 Carica papaya evm.TU.supercontig_30.164 N 0.000
evm.TU.supercontig_34.40 Carica papaya evm.TU.supercontig_34.40 N 0.000
evm.TU.supercontig_358.1 Carica papaya evm.TU.supercontig_358.1 N 0.000
evm.TU.supercontig_4.187 Carica papaya evm.TU.supercontig_4.187 N 0.000
PRUPE_ppa025322mg Prunus persica PRUPE_ppa025322mg N 0.000