evm.TU.contig_37084 (Carica papaya)
MADS box

TF Information

Pfam ID Interpro ID Gene ID CIS-BP ID Sequence source
PF00319 (SRF-TF) IPR002100 evm.TU.contig_37084 T258102_2.00 JGI:Phytozome (2018-Apr-12)

Directly determined binding motifs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
No direct experiments

Motifs from related TFs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
AGL80
M06994_2.00 		Arabidopsis thaliana
TCACCA
TGGTGA		 Dap-seq
OMalley et al.(2016)
FEM111_col_a 		0.783 0.783
For this family, TFs with SR scores > 0.700 will likely have a similar motif

DNA Binding Domains

Protein ID Domain From To Sequence
evm.TU.contig_37084.1 MADS box 13 35

Links

Other MADS box family TFs
Other Carica papaya TFs

37 Related TFs

Name Species Gene ID Motif Evidence SR
Score		 Action
evm.TU.contig_24608 Carica papaya evm.TU.contig_24608 I 0.913
evm.TU.contig_31147 Carica papaya evm.TU.contig_31147 I 0.913
POPTR_0013s01880 Populus trichocarpa POPTR_0013s01880 I 0.870
VIT_14s0060g00300 Vitis vinifera VIT_14s0060g00300 I 0.870
evm.TU.supercontig_118.30 Carica papaya evm.TU.supercontig_118.30 I 0.870
evm.TU.supercontig_1256.1 Carica papaya evm.TU.supercontig_1256.1 N 0.870
SapurV1A.0066s0310 Salix purpurea SapurV1A.0066s0310 I 0.870
Solyc01g102260.2 Solanum lycopersicum Solyc01g102260.2 I 0.826
TCM_026842 Theobroma cacao TCM_026842 I 0.826
evm.TU.contig_28448.4 Carica papaya evm.TU.contig_28448.4 I 0.826
evm.TU.contig_35868 Carica papaya evm.TU.contig_35868 N 0.826
evm.TU.contig_38760 Carica papaya evm.TU.contig_38760 N 0.826
evm.TU.supercontig_1237.1 Carica papaya evm.TU.supercontig_1237.1 I 0.826
evm.TU.supercontig_185.2 Carica papaya evm.TU.supercontig_185.2 I 0.826
evm.TU.supercontig_265.6 Carica papaya evm.TU.supercontig_265.6 N 0.826
evm.TU.supercontig_30.164 Carica papaya evm.TU.supercontig_30.164 N 0.826
MDP0000925348 Malus domestica MDP0000925348 I 0.826
LjT40B16.70.nc Lotus japonicus LjT40B16.70.nc I 0.826
Al_scaffold_0003_569 Arabidopsis lyrata Al_scaffold_0003_569 I 0.783
Bostr.2392s0039 Boechera stricta Bostr.2392s0039 I 0.783
evm.TU.contig_28448.1 Carica papaya evm.TU.contig_28448.1 N 0.783
evm.TU.supercontig_30.166 Carica papaya evm.TU.supercontig_30.166 I 0.783
gene23924-v1.0-hybrid Fragaria vesca gene23924-v1.0-hybrid I 0.783
Lus10014578.g Linum usitatissimum Lus10014578.g I 0.783
Lus10032108.g Linum usitatissimum Lus10032108.g I 0.783
evm.TU.contig_27586 Carica papaya evm.TU.contig_27586 I 0.773
evm.TU.contig_43368 Carica papaya evm.TU.contig_43368 I 0.773
POPTR_0005s00420 Populus trichocarpa POPTR_0005s00420 I 0.739
Cla009163 Citrullus lanatus Cla009163 I 0.739
Aquca_007_00647 Aquilegia coerulea Aquca_007_00647 I 0.739
Eucgr.E01736 Eucalyptus grandis Eucgr.E01736 I 0.739
evm.TU.supercontig_100.9 Carica papaya evm.TU.supercontig_100.9 N 0.739
evm.TU.supercontig_117.19 Carica papaya evm.TU.supercontig_117.19 I 0.739
Thhalv10012000m.g Eutrema salsugineum Thhalv10012000m.g I 0.739
chr6.LjT19B22.120.nd Lotus japonicus chr6.LjT19B22.120.nd I 0.739
evm.TU.contig_38146 Carica papaya evm.TU.contig_38146 I 0.727
evm.TU.contig_40485 Carica papaya evm.TU.contig_40485 I 0.727