LjT40B16.70.nc (Lotus japonicus)
MADS box

TF Information

Pfam ID Interpro ID Gene ID CIS-BP ID Sequence source
PF00319 (SRF-TF) IPR002100 LjT40B16.70.nc T259413_2.00 Superfamily (2010-Oct-26)

Directly determined binding motifs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
No direct experiments

Motifs from related TFs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
AGL80
M06994_2.00 		Arabidopsis thaliana
TCACCA
TGGTGA		 Dap-seq
OMalley et al.(2016)
FEM111_col_a 		0.778 0.778
For this family, TFs with SR scores > 0.700 will likely have a similar motif

DNA Binding Domains

Protein ID Domain From To Sequence
LjT40B16.70.nc MADS box 10 55

Links

Other MADS box family TFs
Other Lotus japonicus TFs

120 Related TFs

Name Species Gene ID Motif Evidence SR
Score		 Action
GLYMA18G04760 Glycine max GLYMA18G04760 I 0.933
GLYMA11G33460 Glycine max GLYMA11G33460 I 0.911
MTR_3g065100 Medicago truncatula MTR_3g065100 I 0.911
Ca_13275 Cicer arietinum Ca_13275 I 0.911
LjSGA_057783.1 Lotus japonicus LjSGA_057783.1 I 0.889
Solyc01g102260.2 Solanum lycopersicum Solyc01g102260.2 I 0.867
Lus10014578.g Linum usitatissimum Lus10014578.g I 0.867
evm.TU.contig_27586 Carica papaya evm.TU.contig_27586 I 0.864
evm.TU.contig_43368 Carica papaya evm.TU.contig_43368 I 0.864
PRUPE_ppa018168mg Prunus persica PRUPE_ppa018168mg I 0.844
Pm004396 Prunus mume Pm004396 I 0.844
MDP0000925348 Malus domestica MDP0000925348 I 0.844
Ca_06495 Cicer arietinum Ca_06495 I 0.841
POPTR_0013s00350 Populus trichocarpa POPTR_0013s00350 I 0.833
VIT_14s0060g00300 Vitis vinifera VIT_14s0060g00300 I 0.833
gene22967-v1.0-hybrid Fragaria vesca gene22967-v1.0-hybrid I 0.833
evm.TU.contig_37084 Carica papaya evm.TU.contig_37084 I 0.826
TCM_026842 Theobroma cacao TCM_026842 I 0.822
Cla005226 Citrullus lanatus Cla005226 I 0.822
evm.TU.contig_28448.4 Carica papaya evm.TU.contig_28448.4 I 0.822
chr6.LjT19B22.120.nd Lotus japonicus chr6.LjT19B22.120.nd I 0.822
evm.TU.supercontig_1750.1 Carica papaya evm.TU.supercontig_1750.1 I 0.818
POPTR_0005s00420 Populus trichocarpa POPTR_0005s00420 I 0.812
cassava19828.m1 Manihot esculenta cassava19828.m1 I 0.812
gene22916-v1.0-hybrid Fragaria vesca gene22916-v1.0-hybrid I 0.812
SapurV1A.0066s0310 Salix purpurea SapurV1A.0066s0310 I 0.809
evm.TU.supercontig_1750.2 Carica papaya evm.TU.supercontig_1750.2 I 0.804
evm.TU.supercontig_265.1 Carica papaya evm.TU.supercontig_265.1 I 0.804
evm.TU.contig_40499.2 Carica papaya evm.TU.contig_40499.2 I 0.800
evm.TU.supercontig_1237.1 Carica papaya evm.TU.supercontig_1237.1 I 0.800
evm.TU.supercontig_185.2 Carica papaya evm.TU.supercontig_185.2 I 0.800
evm.TU.contig_31147 Carica papaya evm.TU.contig_31147 I 0.795
POPTR_0013s01880 Populus trichocarpa POPTR_0013s01880 I 0.792
gene18029-v1.0-hybrid Fragaria vesca gene18029-v1.0-hybrid I 0.792
gene23924-v1.0-hybrid Fragaria vesca gene23924-v1.0-hybrid I 0.792
Lus10032108.g Linum usitatissimum Lus10032108.g I 0.792
30199.m000879 Ricinus communis 30199.m000879 I 0.787
evm.TU.supercontig_117.18 Carica papaya evm.TU.supercontig_117.18 I 0.787
Gorai.004G292000 Gossypium raimondii Gorai.004G292000 I 0.787
Eucgr.E01737 Eucalyptus grandis Eucgr.E01737 I 0.783
Cucsa.050930 Cucumis sativus Cucsa.050930 I 0.778
evm.TU.contig_26058.1 Carica papaya evm.TU.contig_26058.1 I 0.778
evm.TU.contig_33457.2 Carica papaya evm.TU.contig_33457.2 I 0.778
evm.TU.supercontig_185.11 Carica papaya evm.TU.supercontig_185.11 I 0.778
mgf026186m Mimulus guttatus mgf026186m I 0.773
evm.TU.contig_35265 Carica papaya evm.TU.contig_35265 I 0.773
evm.TU.contig_38146 Carica papaya evm.TU.contig_38146 I 0.773
evm.TU.contig_40485 Carica papaya evm.TU.contig_40485 I 0.773
Ciclev10006519m.g Citrus clementina Ciclev10006519m.g I 0.771
Ciclev10013728m.g Citrus clementina Ciclev10013728m.g I 0.771
MDP0000846004 Malus domestica MDP0000846004 I 0.771
SapurV1A.0442s0180 Salix purpurea SapurV1A.0442s0180 I 0.771
SapurV1A.0442s0190 Salix purpurea SapurV1A.0442s0190 I 0.771
evm.TU.contig_25049.5 Carica papaya evm.TU.contig_25049.5 I 0.766
Ciclev10024463m.g Citrus clementina Ciclev10024463m.g I 0.761
Eucgr.E01734 Eucalyptus grandis Eucgr.E01734 I 0.761
orange1.1g040642m.g Citrus sinensis orange1.1g040642m.g I 0.761
evm.TU.contig_25049.1 Carica papaya evm.TU.contig_25049.1 I 0.756
evm.TU.contig_44957 Carica papaya evm.TU.contig_44957 I 0.756
Thhalv10022373m.g Eutrema salsugineum Thhalv10022373m.g I 0.756
30128.m008984 Ricinus communis 30128.m008984 I 0.750
Gorai.013G210200 Gossypium raimondii Gorai.013G210200 I 0.750
evm.TU.contig_36181 Carica papaya evm.TU.contig_36181 I 0.744
LjSGA_147985.1 Lotus japonicus LjSGA_147985.1 I 0.741
Eucgr.E01733 Eucalyptus grandis Eucgr.E01733 I 0.739
Eucgr.E01736 Eucalyptus grandis Eucgr.E01736 I 0.739
evm.TU.supercontig_185.7 Carica papaya evm.TU.supercontig_185.7 I 0.738
GSMUA_Achr3G05500_001 Musa acuminata GSMUA_Achr3G05500_001 I 0.733
GSMUA_Achr3G08500_001 Musa acuminata GSMUA_Achr3G08500_001 N 0.733
Aquca_007_00647 Aquilegia coerulea Aquca_007_00647 I 0.733
Bostr.2392s0039 Boechera stricta Bostr.2392s0039 I 0.733
evm.TU.contig_25982.2 Carica papaya evm.TU.contig_25982.2 I 0.733
evm.TU.contig_26058.2 Carica papaya evm.TU.contig_26058.2 I 0.733
evm.TU.supercontig_185.9 Carica papaya evm.TU.supercontig_185.9 I 0.733
Gorai.004G229700 Gossypium raimondii Gorai.004G229700 N 0.733
AGL80 Arabidopsis thaliana AT5G48670 D 0.729
Bo9g078450 Brassica oleracea Bo9g078450 I 0.729
Bra018490 Brassica rapa Bra018490 I 0.729
Bra029469 Brassica rapa Bra029469 I 0.729
Bostr.2570s0082 Boechera stricta Bostr.2570s0082 I 0.729
evm.TU.supercontig_30.166 Carica papaya evm.TU.supercontig_30.166 I 0.729
evm.TU.contig_35009 Carica papaya evm.TU.contig_35009 I 0.727
PDK_20s1688321g001 Phoenix dactylifera PDK_20s1688321g001 N 0.727
LjSGA_104570.1 Lotus japonicus LjSGA_104570.1 I 0.724
PRUPE_ppa019749mg Prunus persica PRUPE_ppa019749mg I 0.723
Pm003257 Prunus mume Pm003257 I 0.723
evm.TU.contig_24608 Carica papaya evm.TU.contig_24608 I 0.723
Al_scaffold_0003_569 Arabidopsis lyrata Al_scaffold_0003_569 I 0.721
evm.TU.contig_24864.1 Carica papaya evm.TU.contig_24864.1 N 0.717
evm.TU.supercontig_185.8 Carica papaya evm.TU.supercontig_185.8 N 0.717
Bo5g145000 Brassica oleracea Bo5g145000 I 0.711
Bra041022 Brassica rapa Bra041022 I 0.711
GLYMA18G05916 Glycine max GLYMA18G05916 N 0.711
MTR_4g031910 Medicago truncatula MTR_4g031910 N 0.711
Cla009163 Citrullus lanatus Cla009163 I 0.711
cassava15247.m1 Manihot esculenta cassava15247.m1 I 0.711
Aquca_027_00068 Aquilegia coerulea Aquca_027_00068 I 0.711
evm.TU.contig_25049.2 Carica papaya evm.TU.contig_25049.2 N 0.711
evm.TU.contig_28089 Carica papaya evm.TU.contig_28089 I 0.711
evm.TU.contig_35762 Carica papaya evm.TU.contig_35762 N 0.711
evm.TU.contig_38760 Carica papaya evm.TU.contig_38760 N 0.711
evm.TU.supercontig_117.19 Carica papaya evm.TU.supercontig_117.19 I 0.711
evm.TU.supercontig_185.12 Carica papaya evm.TU.supercontig_185.12 I 0.711
evm.TU.supercontig_30.164 Carica papaya evm.TU.supercontig_30.164 N 0.711
LjSGA_107301.1 Lotus japonicus LjSGA_107301.1 I 0.711
LjSGA_126766.1 Lotus japonicus LjSGA_126766.1 I 0.711
Bo2g104810 Brassica oleracea Bo2g104810 I 0.708
TCM_025670 Theobroma cacao TCM_025670 I 0.708
Cagra.1772s0003 Capsella grandiflora Cagra.1772s0003 I 0.708
Carubv10014232m.g Capsella rubella Carubv10014232m.g I 0.708
Thhalv10023873m.g Eutrema salsugineum Thhalv10023873m.g I 0.708
Thhalv10024119m.g Eutrema salsugineum Thhalv10024119m.g I 0.708
Ca_08934 Cicer arietinum Ca_08934 I 0.705
evm.TU.contig_25253.1 Carica papaya evm.TU.contig_25253.1 N 0.705
MDP0000123878 Malus domestica MDP0000123878 I 0.704
MDP0000726295 Malus domestica MDP0000726295 I 0.704
TCM_025671 Theobroma cacao TCM_025671 I 0.702
evm.TU.contig_25253.2 Carica papaya evm.TU.contig_25253.2 N 0.702
evm.TU.supercontig_265.6 Carica papaya evm.TU.supercontig_265.6 N 0.702
evm.TU.supercontig_22.66 Carica papaya evm.TU.supercontig_22.66 N 0.700