TCM_025670 (Theobroma cacao)
MADS box

TF Information

Pfam ID Interpro ID Gene ID CIS-BP ID Sequence source Animal TF db
PF00319 (SRF-TF) IPR002100 TCM_025670 T256463_2.00 Ensembl (2018-Dec-8) Link out

Directly determined binding motifs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
No direct experiments

Motifs from related TFs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
AGL80
M06994_2.00 		Arabidopsis thaliana
TCACCA
TGGTGA		 Dap-seq
OMalley et al.(2016)
FEM111_col_a 		0.771 0.771
For this family, TFs with SR scores > 0.700 will likely have a similar motif

DNA Binding Domains

Protein ID Domain From To Sequence
EOY10299 MADS box 10 58

Links

Other MADS box family TFs
Other Theobroma cacao TFs

70 Related TFs

Name Species Gene ID Motif Evidence SR
Score		 Action
TCM_025671 Theobroma cacao TCM_025671 I 0.896
TCM_025676 Theobroma cacao TCM_025676 N 0.896
30128.m008984 Ricinus communis 30128.m008984 I 0.854
POPTR_0013s01880 Populus trichocarpa POPTR_0013s01880 I 0.833
TCM_026845 Theobroma cacao TCM_026845 I 0.833
VIT_14s0060g00300 Vitis vinifera VIT_14s0060g00300 I 0.833
cassava19828.m1 Manihot esculenta cassava19828.m1 I 0.833
Ciclev10006519m.g Citrus clementina Ciclev10006519m.g I 0.833
Ciclev10013728m.g Citrus clementina Ciclev10013728m.g I 0.833
POPTR_0013s00350 Populus trichocarpa POPTR_0013s00350 I 0.812
TCM_026842 Theobroma cacao TCM_026842 I 0.812
TCM_042799 Theobroma cacao TCM_042799 I 0.812
gene22967-v1.0-hybrid Fragaria vesca gene22967-v1.0-hybrid I 0.812
POPTR_0005s00420 Populus trichocarpa POPTR_0005s00420 I 0.792
TCM_042848 Theobroma cacao TCM_042848 N 0.792
gene18029-v1.0-hybrid Fragaria vesca gene18029-v1.0-hybrid I 0.792
SapurV1A.0066s0310 Salix purpurea SapurV1A.0066s0310 I 0.792
Ciclev10024463m.g Citrus clementina Ciclev10024463m.g I 0.783
orange1.1g040642m.g Citrus sinensis orange1.1g040642m.g I 0.783
PRUPE_ppa018168mg Prunus persica PRUPE_ppa018168mg I 0.778
Pm004396 Prunus mume Pm004396 I 0.778
AGL80 Arabidopsis thaliana AT5G48670 D 0.771
PRUPE_ppa019749mg Prunus persica PRUPE_ppa019749mg I 0.771
Pm003257 Prunus mume Pm003257 I 0.771
30199.m000879 Ricinus communis 30199.m000879 I 0.771
gene23924-v1.0-hybrid Fragaria vesca gene23924-v1.0-hybrid I 0.771
Thhalv10023873m.g Eutrema salsugineum Thhalv10023873m.g I 0.771
Thhalv10024119m.g Eutrema salsugineum Thhalv10024119m.g I 0.771
GLYMA11G33460 Glycine max GLYMA11G33460 I 0.756
Bo9g078450 Brassica oleracea Bo9g078450 I 0.750
Bra029469 Brassica rapa Bra029469 I 0.750
MTR_3g065100 Medicago truncatula MTR_3g065100 I 0.750
Ca_13275 Cicer arietinum Ca_13275 I 0.750
Bostr.2570s0082 Boechera stricta Bostr.2570s0082 I 0.750
gene22916-v1.0-hybrid Fragaria vesca gene22916-v1.0-hybrid I 0.750
Lus10014578.g Linum usitatissimum Lus10014578.g I 0.750
MDP0000846004 Malus domestica MDP0000846004 I 0.750
Eucgr.E01737 Eucalyptus grandis Eucgr.E01737 I 0.739
Cla005226 Citrullus lanatus Cla005226 I 0.733
cassava15247.m1 Manihot esculenta cassava15247.m1 I 0.733
GLYMA18G04760 Glycine max GLYMA18G04760 I 0.729
Solyc01g102260.2 Solanum lycopersicum Solyc01g102260.2 I 0.729
Ca_06495 Cicer arietinum Ca_06495 I 0.729
Cagra.1772s0003 Capsella grandiflora Cagra.1772s0003 I 0.729
Carubv10014232m.g Capsella rubella Carubv10014232m.g I 0.729
evm.TU.contig_28448.4 Carica papaya evm.TU.contig_28448.4 I 0.729
evm.TU.contig_36543 Carica papaya evm.TU.contig_36543 I 0.729
evm.TU.contig_40499.2 Carica papaya evm.TU.contig_40499.2 I 0.729
Gorai.004G292000 Gossypium raimondii Gorai.004G292000 I 0.729
Lus10032108.g Linum usitatissimum Lus10032108.g I 0.729
SapurV1A.0442s0180 Salix purpurea SapurV1A.0442s0180 I 0.729
SapurV1A.0442s0190 Salix purpurea SapurV1A.0442s0190 I 0.729
AT3G05860 Arabidopsis thaliana AT3G05860 I 0.708
Bo2g104810 Brassica oleracea Bo2g104810 I 0.708
Bra018490 Brassica rapa Bra018490 I 0.708
TCM_025674 Theobroma cacao TCM_025674 N 0.708
evm.TU.contig_25049.5 Carica papaya evm.TU.contig_25049.5 I 0.708
evm.TU.contig_39415 Carica papaya evm.TU.contig_39415 I 0.708
evm.TU.contig_40189 Carica papaya evm.TU.contig_40189 I 0.708
evm.TU.supercontig_117.18 Carica papaya evm.TU.supercontig_117.18 I 0.708
evm.TU.supercontig_118.30 Carica papaya evm.TU.supercontig_118.30 I 0.708
evm.TU.supercontig_139.40 Carica papaya evm.TU.supercontig_139.40 I 0.708
evm.TU.supercontig_1750.2 Carica papaya evm.TU.supercontig_1750.2 I 0.708
evm.TU.supercontig_265.1 Carica papaya evm.TU.supercontig_265.1 I 0.708
evm.TU.supercontig_30.166 Carica papaya evm.TU.supercontig_30.166 I 0.708
Gorai.004G054700 Gossypium raimondii Gorai.004G054700 N 0.708
MDP0000925348 Malus domestica MDP0000925348 I 0.708
Thhalv10022373m.g Eutrema salsugineum Thhalv10022373m.g I 0.708
Thhalv10024162m.g Eutrema salsugineum Thhalv10024162m.g I 0.708
LjT40B16.70.nc Lotus japonicus LjT40B16.70.nc I 0.708