TCM_026842 (Theobroma cacao)
MADS box

TF Information

Pfam ID Interpro ID Gene ID CIS-BP ID Sequence source Animal TF db
PF00319 (SRF-TF) IPR002100 TCM_026842 T256467_2.00 Ensembl (2018-Dec-8) Link out

Directly determined binding motifs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
No direct experiments

Motifs from related TFs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
AGL80
M06994_2.00 		Arabidopsis thaliana
TCACCA
TGGTGA		 Dap-seq
OMalley et al.(2016)
FEM111_col_a 		0.851 0.851
For this family, TFs with SR scores > 0.700 will likely have a similar motif

DNA Binding Domains

Protein ID Domain From To Sequence
EOY11773 MADS box 44 91

Links

Other MADS box family TFs
Other Theobroma cacao TFs

158 Related TFs

Name Species Gene ID Motif Evidence SR
Score		 Action
SapurV1A.0066s0310 Salix purpurea SapurV1A.0066s0310 I 0.936
POPTR_0013s01880 Populus trichocarpa POPTR_0013s01880 I 0.896
30128.m008984 Ricinus communis 30128.m008984 I 0.896
VIT_14s0060g00300 Vitis vinifera VIT_14s0060g00300 I 0.875
cassava19828.m1 Manihot esculenta cassava19828.m1 I 0.875
Ciclev10006519m.g Citrus clementina Ciclev10006519m.g I 0.875
Ciclev10013728m.g Citrus clementina Ciclev10013728m.g I 0.875
Thhalv10023873m.g Eutrema salsugineum Thhalv10023873m.g I 0.875
Thhalv10024119m.g Eutrema salsugineum Thhalv10024119m.g I 0.875
TCM_025671 Theobroma cacao TCM_025671 I 0.872
30199.m000879 Ricinus communis 30199.m000879 I 0.872
MTR_3g065100 Medicago truncatula MTR_3g065100 I 0.867
PRUPE_ppa018168mg Prunus persica PRUPE_ppa018168mg I 0.867
Ca_13275 Cicer arietinum Ca_13275 I 0.867
Pm004396 Prunus mume Pm004396 I 0.867
evm.TU.contig_27586 Carica papaya evm.TU.contig_27586 I 0.864
evm.TU.contig_43368 Carica papaya evm.TU.contig_43368 I 0.864
LjSGA_104570.1 Lotus japonicus LjSGA_104570.1 I 0.862
POPTR_0013s00350 Populus trichocarpa POPTR_0013s00350 I 0.854
Bostr.2570s0082 Boechera stricta Bostr.2570s0082 I 0.854
gene22967-v1.0-hybrid Fragaria vesca gene22967-v1.0-hybrid I 0.854
Ciclev10024463m.g Citrus clementina Ciclev10024463m.g I 0.848
Eucgr.E01737 Eucalyptus grandis Eucgr.E01737 I 0.848
orange1.1g040642m.g Citrus sinensis orange1.1g040642m.g I 0.848
chr6.LjT19B22.120.nd Lotus japonicus chr6.LjT19B22.120.nd I 0.848
GLYMA18G04760 Glycine max GLYMA18G04760 I 0.844
Cla005226 Citrullus lanatus Cla005226 I 0.844
Cla009163 Citrullus lanatus Cla009163 I 0.844
Cucsa.050930 Cucumis sativus Cucsa.050930 I 0.844
MDP0000925348 Malus domestica MDP0000925348 I 0.844
Ca_06495 Cicer arietinum Ca_06495 I 0.841
mgf026186m Mimulus guttatus mgf026186m I 0.841
AGL80 Arabidopsis thaliana AT5G48670 D 0.833
Bo9g078450 Brassica oleracea Bo9g078450 I 0.833
Bra029469 Brassica rapa Bra029469 I 0.833
POPTR_0005s00420 Populus trichocarpa POPTR_0005s00420 I 0.833
Cagra.1772s0003 Capsella grandiflora Cagra.1772s0003 I 0.833
Carubv10014232m.g Capsella rubella Carubv10014232m.g I 0.833
gene18029-v1.0-hybrid Fragaria vesca gene18029-v1.0-hybrid I 0.833
Thhalv10027038m.g Eutrema salsugineum Thhalv10027038m.g I 0.829
evm.TU.contig_37084 Carica papaya evm.TU.contig_37084 I 0.826
GLYMA11G33460 Glycine max GLYMA11G33460 I 0.822
Solyc01g102260.2 Solanum lycopersicum Solyc01g102260.2 I 0.822
LjT40B16.70.nc Lotus japonicus LjT40B16.70.nc I 0.822
evm.TU.contig_35265 Carica papaya evm.TU.contig_35265 I 0.818
evm.TU.contig_38146 Carica papaya evm.TU.contig_38146 I 0.818
Gorai.013G168300 Gossypium raimondii Gorai.013G168300 I 0.816
Al_scaffold_0003_569 Arabidopsis lyrata Al_scaffold_0003_569 I 0.814
LjSGA_018236.1 Lotus japonicus LjSGA_018236.1 I 0.814
Bra018490 Brassica rapa Bra018490 I 0.812
TCM_025670 Theobroma cacao TCM_025670 I 0.812
TCM_026845 Theobroma cacao TCM_026845 I 0.812
gene22916-v1.0-hybrid Fragaria vesca gene22916-v1.0-hybrid I 0.812
gene23924-v1.0-hybrid Fragaria vesca gene23924-v1.0-hybrid I 0.812
MDP0000846004 Malus domestica MDP0000846004 I 0.812
Thhalv10022373m.g Eutrema salsugineum Thhalv10022373m.g I 0.812
PRUPE_ppa019749mg Prunus persica PRUPE_ppa019749mg I 0.809
Pm003257 Prunus mume Pm003257 I 0.809
evm.TU.contig_28448.4 Carica papaya evm.TU.contig_28448.4 I 0.809
Eucgr.E01733 Eucalyptus grandis Eucgr.E01733 I 0.804
Eucgr.E01736 Eucalyptus grandis Eucgr.E01736 I 0.804
evm.TU.supercontig_1750.2 Carica papaya evm.TU.supercontig_1750.2 I 0.804
evm.TU.supercontig_265.1 Carica papaya evm.TU.supercontig_265.1 I 0.804
Bostr.2392s0039 Boechera stricta Bostr.2392s0039 I 0.800
evm.TU.contig_26058.1 Carica papaya evm.TU.contig_26058.1 I 0.800
evm.TU.contig_40499.2 Carica papaya evm.TU.contig_40499.2 I 0.800
evm.TU.supercontig_1237.1 Carica papaya evm.TU.supercontig_1237.1 I 0.800
LjSGA_107301.1 Lotus japonicus LjSGA_107301.1 I 0.800
LjSGA_126766.1 Lotus japonicus LjSGA_126766.1 I 0.800
Bo2g104810 Brassica oleracea Bo2g104810 I 0.792
TCM_042799 Theobroma cacao TCM_042799 I 0.792
Gorai.013G210200 Gossypium raimondii Gorai.013G210200 I 0.792
Lus10014578.g Linum usitatissimum Lus10014578.g I 0.792
Thhalv10012000m.g Eutrema salsugineum Thhalv10012000m.g I 0.792
Thhalv10024162m.g Eutrema salsugineum Thhalv10024162m.g I 0.792
evm.TU.contig_25049.5 Carica papaya evm.TU.contig_25049.5 I 0.787
evm.TU.supercontig_117.18 Carica papaya evm.TU.supercontig_117.18 I 0.787
Gorai.004G292000 Gossypium raimondii Gorai.004G292000 I 0.787
Eucgr.E01734 Eucalyptus grandis Eucgr.E01734 I 0.783
cassava15247.m1 Manihot esculenta cassava15247.m1 I 0.778
evm.TU.contig_25049.1 Carica papaya evm.TU.contig_25049.1 I 0.778
Gorai.013G210700 Gossypium raimondii Gorai.013G210700 N 0.778
LjSGA_057783.1 Lotus japonicus LjSGA_057783.1 I 0.778
LjSGA_147985.1 Lotus japonicus LjSGA_147985.1 I 0.778
Ca_08934 Cicer arietinum Ca_08934 I 0.773
evm.TU.contig_31147 Carica papaya evm.TU.contig_31147 I 0.773
evm.TU.contig_40485 Carica papaya evm.TU.contig_40485 I 0.773
evm.TU.supercontig_1750.1 Carica papaya evm.TU.supercontig_1750.1 I 0.773
Lus10032108.g Linum usitatissimum Lus10032108.g I 0.771
SapurV1A.0442s0180 Salix purpurea SapurV1A.0442s0180 I 0.771
SapurV1A.0442s0190 Salix purpurea SapurV1A.0442s0190 I 0.771
evm.TU.contig_36181 Carica papaya evm.TU.contig_36181 I 0.767
evm.TU.supercontig_185.7 Carica papaya evm.TU.supercontig_185.7 I 0.762
LjSGA_042497.2 Lotus japonicus LjSGA_042497.2 I 0.761
Bo5g145000 Brassica oleracea Bo5g145000 I 0.756
Bra041022 Brassica rapa Bra041022 I 0.756
Cucsa.224270 Cucumis sativus Cucsa.224270 I 0.756
Aquca_027_00068 Aquilegia coerulea Aquca_027_00068 I 0.756
evm.TU.contig_25982.2 Carica papaya evm.TU.contig_25982.2 I 0.756
evm.TU.contig_26058.2 Carica papaya evm.TU.contig_26058.2 I 0.756
evm.TU.contig_33457.2 Carica papaya evm.TU.contig_33457.2 I 0.756
evm.TU.contig_44957 Carica papaya evm.TU.contig_44957 I 0.756
evm.TU.supercontig_117.19 Carica papaya evm.TU.supercontig_117.19 I 0.756
evm.TU.supercontig_185.11 Carica papaya evm.TU.supercontig_185.11 I 0.756
evm.TU.supercontig_185.2 Carica papaya evm.TU.supercontig_185.2 I 0.756
evm.TU.supercontig_185.9 Carica papaya evm.TU.supercontig_185.9 I 0.756
Gorai.013G210400 Gossypium raimondii Gorai.013G210400 I 0.756
AT3G05860 Arabidopsis thaliana AT3G05860 I 0.750
TCM_025676 Theobroma cacao TCM_025676 N 0.750
TCM_042848 Theobroma cacao TCM_042848 N 0.750
evm.TU.supercontig_30.166 Carica papaya evm.TU.supercontig_30.166 I 0.750
Thhalv10019481m.g Eutrema salsugineum Thhalv10019481m.g I 0.750
GLYMA18G05916 Glycine max GLYMA18G05916 N 0.733
Aquca_007_00647 Aquilegia coerulea Aquca_007_00647 I 0.733
evm.TU.contig_25049.2 Carica papaya evm.TU.contig_25049.2 N 0.733
Ca_08369 Cicer arietinum Ca_08369 N 0.729
Bostr.2570s0083 Boechera stricta Bostr.2570s0083 I 0.729
evm.TU.supercontig_118.30 Carica papaya evm.TU.supercontig_118.30 I 0.729
evm.TU.supercontig_139.40 Carica papaya evm.TU.supercontig_139.40 I 0.729
gene04949-v1.0-hybrid Fragaria vesca gene04949-v1.0-hybrid I 0.729
GLYMA11G30640 Glycine max GLYMA11G30640 N 0.727
GLYMA18G06040 Glycine max GLYMA18G06040 N 0.727
MTR_4g031910 Medicago truncatula MTR_4g031910 N 0.727
evm.TU.contig_28089 Carica papaya evm.TU.contig_28089 I 0.727
evm.TU.contig_35009 Carica papaya evm.TU.contig_35009 I 0.727
evm.TU.supercontig_185.12 Carica papaya evm.TU.supercontig_185.12 I 0.727
Thhalv10002352m.g Eutrema salsugineum Thhalv10002352m.g I 0.727
Thhalv10021183m.g Eutrema salsugineum Thhalv10021183m.g I 0.727
evm.TU.contig_24608 Carica papaya evm.TU.contig_24608 I 0.723
GLYMA11G26260 Glycine max GLYMA11G26260 N 0.720
GLYMA03G19880 Glycine max GLYMA03G19880 N 0.717
evm.TU.contig_24864.1 Carica papaya evm.TU.contig_24864.1 N 0.717
evm.TU.supercontig_185.8 Carica papaya evm.TU.supercontig_185.8 N 0.717
Thhalv10019731m.g Eutrema salsugineum Thhalv10019731m.g I 0.714
GSMUA_Achr3G05500_001 Musa acuminata GSMUA_Achr3G05500_001 I 0.711
MTR_3g466980 Medicago truncatula MTR_3g466980 N 0.711
Eucgr.B01824 Eucalyptus grandis Eucgr.B01824 I 0.711
evm.TU.contig_35762 Carica papaya evm.TU.contig_35762 N 0.711
evm.TU.contig_38760 Carica papaya evm.TU.contig_38760 N 0.711
evm.TU.supercontig_30.164 Carica papaya evm.TU.supercontig_30.164 N 0.711
evm.TU.supercontig_34.40 Carica papaya evm.TU.supercontig_34.40 N 0.711
Thhalv10002350m.g Eutrema salsugineum Thhalv10002350m.g I 0.711
evm.TU.supercontig_100.22 Carica papaya evm.TU.supercontig_100.22 N 0.708
Lus10022316.g Linum usitatissimum Lus10022316.g I 0.708
cassava38612.m1 Manihot esculenta cassava38612.m1 N 0.707
MTR_8g036130 Medicago truncatula MTR_8g036130 N 0.705
evm.TU.contig_25253.1 Carica papaya evm.TU.contig_25253.1 N 0.705
Gorai.013G210300 Gossypium raimondii Gorai.013G210300 N 0.705
Thhalv10002353m.g Eutrema salsugineum Thhalv10002353m.g I 0.705
evm.TU.contig_25253.2 Carica papaya evm.TU.contig_25253.2 N 0.702
evm.TU.contig_28448.1 Carica papaya evm.TU.contig_28448.1 N 0.702
evm.TU.supercontig_265.6 Carica papaya evm.TU.supercontig_265.6 N 0.702
evm.TU.supercontig_358.1 Carica papaya evm.TU.supercontig_358.1 N 0.702
Thhalv10002346m.g Eutrema salsugineum Thhalv10002346m.g I 0.702
Thhalv10019451m.g Eutrema salsugineum Thhalv10019451m.g I 0.702
Thhalv10019579m.g Eutrema salsugineum Thhalv10019579m.g I 0.702
Thhalv10019751m.g Eutrema salsugineum Thhalv10019751m.g I 0.702
evm.TU.supercontig_22.66 Carica papaya evm.TU.supercontig_22.66 N 0.700