LjSGA_042497.2 (Lotus japonicus)
MADS box

TF Information

Pfam ID Interpro ID Gene ID CIS-BP ID Sequence source
PF00319 (SRF-TF) IPR002100 LjSGA_042497.2 T259380_2.00 Superfamily (2010-Oct-26)

Directly determined binding motifs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
No direct experiments

Motifs from related TFs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
AGL80
M06994_2.00 		Arabidopsis thaliana
TCACCA
TGGTGA		 Dap-seq
OMalley et al.(2016)
FEM111_col_a 		0.717 0.717
For this family, TFs with SR scores > 0.700 will likely have a similar motif

DNA Binding Domains

Protein ID Domain From To Sequence
LjSGA_042497.2 MADS box 11 56

Links

Other MADS box family TFs
Other Lotus japonicus TFs

39 Related TFs

Name Species Gene ID Motif Evidence SR
Score		 Action
LjSGA_126766.1 Lotus japonicus LjSGA_126766.1 I 0.889
LjSGA_107301.1 Lotus japonicus LjSGA_107301.1 I 0.870
LjSGA_018236.1 Lotus japonicus LjSGA_018236.1 I 0.848
Ca_08934 Cicer arietinum Ca_08934 I 0.795
Gorai.013G210200 Gossypium raimondii Gorai.013G210200 I 0.792
chr6.LjT19B22.120.nd Lotus japonicus chr6.LjT19B22.120.nd I 0.783
MTR_8g036130 Medicago truncatula MTR_8g036130 N 0.773
TCM_026842 Theobroma cacao TCM_026842 I 0.761
Gorai.004G292000 Gossypium raimondii Gorai.004G292000 I 0.761
MTR_4g028800 Medicago truncatula MTR_4g028800 N 0.756
cassava15247.m1 Manihot esculenta cassava15247.m1 I 0.756
30128.m008984 Ricinus communis 30128.m008984 I 0.750
mgf026186m Mimulus guttatus mgf026186m I 0.750
POPTR_0013s01880 Populus trichocarpa POPTR_0013s01880 I 0.739
Ca_06495 Cicer arietinum Ca_06495 I 0.739
Cucsa.050930 Cucumis sativus Cucsa.050930 I 0.739
SapurV1A.0066s0310 Salix purpurea SapurV1A.0066s0310 I 0.739
PRUPE_ppa018168mg Prunus persica PRUPE_ppa018168mg I 0.733
Pm004396 Prunus mume Pm004396 I 0.733
cassava19828.m1 Manihot esculenta cassava19828.m1 I 0.729
Bo9g078450 Brassica oleracea Bo9g078450 I 0.717
Bra018490 Brassica rapa Bra018490 I 0.717
Bra029469 Brassica rapa Bra029469 I 0.717
MTR_3g065100 Medicago truncatula MTR_3g065100 I 0.717
MTR_4g032260 Medicago truncatula MTR_4g032260 N 0.717
MTR_4g032290 Medicago truncatula MTR_4g032290 N 0.717
POPTR_0005s00420 Populus trichocarpa POPTR_0005s00420 I 0.717
POPTR_0013s00350 Populus trichocarpa POPTR_0013s00350 I 0.717
Solyc01g102260.2 Solanum lycopersicum Solyc01g102260.2 I 0.717
VIT_14s0060g00300 Vitis vinifera VIT_14s0060g00300 I 0.717
Ca_13275 Cicer arietinum Ca_13275 I 0.717
Aquca_027_00068 Aquilegia coerulea Aquca_027_00068 I 0.717
Eucgr.E01737 Eucalyptus grandis Eucgr.E01737 I 0.717
Lus10014578.g Linum usitatissimum Lus10014578.g I 0.717
Thhalv10012000m.g Eutrema salsugineum Thhalv10012000m.g I 0.717
Thhalv10023873m.g Eutrema salsugineum Thhalv10023873m.g I 0.717
Thhalv10024119m.g Eutrema salsugineum Thhalv10024119m.g I 0.717
Cla005226 Citrullus lanatus Cla005226 I 0.711
GLYMA18G06040 Glycine max GLYMA18G06040 N 0.705