Solyc01g102260.2 (Solanum lycopersicum)
MADS box

TF Information

Pfam ID Interpro ID Gene ID CIS-BP ID Sequence source Animal TF db
PF00319 (SRF-TF) IPR002100 Solyc01g102260.2 T256300_2.00 Ensembl (2018-Dec-8) Link out

Directly determined binding motifs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
No direct experiments

Motifs from related TFs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
AGL80
M06994_2.00 		Arabidopsis thaliana
TCACCA
TGGTGA		 Dap-seq
OMalley et al.(2016)
FEM111_col_a 		0.800 0.800
For this family, TFs with SR scores > 0.700 will likely have a similar motif

DNA Binding Domains

Protein ID Domain From To Sequence
Solyc01g102260.2.1 MADS box 10 57

Links

Other MADS box family TFs
Other Solanum lycopersicum TFs

135 Related TFs

Name Species Gene ID Motif Evidence SR
Score		 Action
MTR_3g065100 Medicago truncatula MTR_3g065100 I 0.911
Ca_13275 Cicer arietinum Ca_13275 I 0.911
Ca_06495 Cicer arietinum Ca_06495 I 0.909
GLYMA18G04760 Glycine max GLYMA18G04760 I 0.889
GLYMA11G33460 Glycine max GLYMA11G33460 I 0.867
Bostr.2392s0039 Boechera stricta Bostr.2392s0039 I 0.867
LjT40B16.70.nc Lotus japonicus LjT40B16.70.nc I 0.867
evm.TU.contig_27586 Carica papaya evm.TU.contig_27586 I 0.864
evm.TU.contig_43368 Carica papaya evm.TU.contig_43368 I 0.864
Gorai.004G292000 Gossypium raimondii Gorai.004G292000 I 0.830
LjSGA_104570.1 Lotus japonicus LjSGA_104570.1 I 0.828
evm.TU.contig_37084 Carica papaya evm.TU.contig_37084 I 0.826
TCM_026842 Theobroma cacao TCM_026842 I 0.822
mgf026186m Mimulus guttatus mgf026186m I 0.818
evm.TU.supercontig_1750.1 Carica papaya evm.TU.supercontig_1750.1 I 0.818
evm.TU.contig_36181 Carica papaya evm.TU.contig_36181 I 0.814
POPTR_0005s00420 Populus trichocarpa POPTR_0005s00420 I 0.812
VIT_14s0060g00300 Vitis vinifera VIT_14s0060g00300 I 0.812
cassava19828.m1 Manihot esculenta cassava19828.m1 I 0.812
SapurV1A.0066s0310 Salix purpurea SapurV1A.0066s0310 I 0.809
Eucgr.E01737 Eucalyptus grandis Eucgr.E01737 I 0.804
chr6.LjT19B22.120.nd Lotus japonicus chr6.LjT19B22.120.nd I 0.804
PRUPE_ppa018168mg Prunus persica PRUPE_ppa018168mg I 0.800
Pm004396 Prunus mume Pm004396 I 0.800
evm.TU.contig_26058.2 Carica papaya evm.TU.contig_26058.2 I 0.800
MDP0000925348 Malus domestica MDP0000925348 I 0.800
evm.TU.contig_31147 Carica papaya evm.TU.contig_31147 I 0.795
POPTR_0013s00350 Populus trichocarpa POPTR_0013s00350 I 0.792
POPTR_0013s01880 Populus trichocarpa POPTR_0013s01880 I 0.792
gene22967-v1.0-hybrid Fragaria vesca gene22967-v1.0-hybrid I 0.792
Al_scaffold_0003_569 Arabidopsis lyrata Al_scaffold_0003_569 I 0.791
30199.m000879 Ricinus communis 30199.m000879 I 0.787
Eucgr.E01734 Eucalyptus grandis Eucgr.E01734 I 0.783
Cla005226 Citrullus lanatus Cla005226 I 0.778
cassava15247.m1 Manihot esculenta cassava15247.m1 I 0.778
Cucsa.050930 Cucumis sativus Cucsa.050930 I 0.778
Aquca_027_00068 Aquilegia coerulea Aquca_027_00068 I 0.778
evm.TU.contig_25049.2 Carica papaya evm.TU.contig_25049.2 N 0.778
evm.TU.contig_40499.2 Carica papaya evm.TU.contig_40499.2 I 0.778
evm.TU.contig_35265 Carica papaya evm.TU.contig_35265 I 0.773
evm.TU.contig_38146 Carica papaya evm.TU.contig_38146 I 0.773
evm.TU.contig_40485 Carica papaya evm.TU.contig_40485 I 0.773
Ciclev10006519m.g Citrus clementina Ciclev10006519m.g I 0.771
Ciclev10013728m.g Citrus clementina Ciclev10013728m.g I 0.771
gene22916-v1.0-hybrid Fragaria vesca gene22916-v1.0-hybrid I 0.771
evm.TU.supercontig_185.6 Carica papaya evm.TU.supercontig_185.6 N 0.769
LjSGA_018236.1 Lotus japonicus LjSGA_018236.1 I 0.767
evm.TU.supercontig_117.18 Carica papaya evm.TU.supercontig_117.18 I 0.766
Gorai.013G168300 Gossypium raimondii Gorai.013G168300 I 0.763
evm.TU.supercontig_185.7 Carica papaya evm.TU.supercontig_185.7 I 0.762
Ciclev10024463m.g Citrus clementina Ciclev10024463m.g I 0.761
Eucgr.E01733 Eucalyptus grandis Eucgr.E01733 I 0.761
Eucgr.E01736 Eucalyptus grandis Eucgr.E01736 I 0.761
evm.TU.supercontig_1750.2 Carica papaya evm.TU.supercontig_1750.2 I 0.761
evm.TU.supercontig_265.1 Carica papaya evm.TU.supercontig_265.1 I 0.761
orange1.1g040642m.g Citrus sinensis orange1.1g040642m.g I 0.761
Aquca_007_00647 Aquilegia coerulea Aquca_007_00647 I 0.756
evm.TU.contig_26058.1 Carica papaya evm.TU.contig_26058.1 I 0.756
evm.TU.supercontig_117.19 Carica papaya evm.TU.supercontig_117.19 I 0.756
evm.TU.supercontig_1237.1 Carica papaya evm.TU.supercontig_1237.1 I 0.756
AGL80 Arabidopsis thaliana AT5G48670 D 0.750
Bo9g078450 Brassica oleracea Bo9g078450 I 0.750
Bra018490 Brassica rapa Bra018490 I 0.750
Bra029469 Brassica rapa Bra029469 I 0.750
MTR_4g031910 Medicago truncatula MTR_4g031910 N 0.750
Ca_08934 Cicer arietinum Ca_08934 I 0.750
30128.m008984 Ricinus communis 30128.m008984 I 0.750
Bostr.2570s0082 Boechera stricta Bostr.2570s0082 I 0.750
evm.TU.contig_28089 Carica papaya evm.TU.contig_28089 I 0.750
evm.TU.contig_35009 Carica papaya evm.TU.contig_35009 I 0.750
evm.TU.supercontig_185.12 Carica papaya evm.TU.supercontig_185.12 I 0.750
gene18029-v1.0-hybrid Fragaria vesca gene18029-v1.0-hybrid I 0.750
gene23924-v1.0-hybrid Fragaria vesca gene23924-v1.0-hybrid I 0.750
Gorai.013G210200 Gossypium raimondii Gorai.013G210200 I 0.750
evm.TU.contig_24608 Carica papaya evm.TU.contig_24608 I 0.745
evm.TU.contig_28448.4 Carica papaya evm.TU.contig_28448.4 I 0.745
LjSGA_057783.1 Lotus japonicus LjSGA_057783.1 I 0.741
LjSGA_147985.1 Lotus japonicus LjSGA_147985.1 I 0.741
Bo5g145000 Brassica oleracea Bo5g145000 I 0.733
Bra041022 Brassica rapa Bra041022 I 0.733
GSMUA_Achr3G05500_001 Musa acuminata GSMUA_Achr3G05500_001 I 0.733
Cla009163 Citrullus lanatus Cla009163 I 0.733
evm.TU.contig_25049.1 Carica papaya evm.TU.contig_25049.1 I 0.733
evm.TU.contig_33457.2 Carica papaya evm.TU.contig_33457.2 I 0.733
evm.TU.contig_38760 Carica papaya evm.TU.contig_38760 N 0.733
evm.TU.supercontig_185.11 Carica papaya evm.TU.supercontig_185.11 I 0.733
evm.TU.supercontig_185.2 Carica papaya evm.TU.supercontig_185.2 I 0.733
evm.TU.supercontig_30.164 Carica papaya evm.TU.supercontig_30.164 N 0.733
LjSGA_107301.1 Lotus japonicus LjSGA_107301.1 I 0.733
LjSGA_126766.1 Lotus japonicus LjSGA_126766.1 I 0.733
Gorai.003G105600 Gossypium raimondii Gorai.003G105600 N 0.731
Bo2g104810 Brassica oleracea Bo2g104810 I 0.729
TCM_025670 Theobroma cacao TCM_025670 I 0.729
Cagra.1772s0003 Capsella grandiflora Cagra.1772s0003 I 0.729
Carubv10014232m.g Capsella rubella Carubv10014232m.g I 0.729
Lus10014578.g Linum usitatissimum Lus10014578.g I 0.729
MDP0000846004 Malus domestica MDP0000846004 I 0.729
SapurV1A.0442s0180 Salix purpurea SapurV1A.0442s0180 I 0.729
SapurV1A.0442s0190 Salix purpurea SapurV1A.0442s0190 I 0.729
Thhalv10012000m.g Eutrema salsugineum Thhalv10012000m.g I 0.729
Thhalv10022373m.g Eutrema salsugineum Thhalv10022373m.g I 0.729
Thhalv10023873m.g Eutrema salsugineum Thhalv10023873m.g I 0.729
Thhalv10024119m.g Eutrema salsugineum Thhalv10024119m.g I 0.729
GLYMA11G30640 Glycine max GLYMA11G30640 N 0.727
evm.TU.contig_25253.1 Carica papaya evm.TU.contig_25253.1 N 0.727
Thhalv10002352m.g Eutrema salsugineum Thhalv10002352m.g I 0.727
PRUPE_ppa019749mg Prunus persica PRUPE_ppa019749mg I 0.723
Pm003257 Prunus mume Pm003257 I 0.723
evm.TU.contig_25049.5 Carica papaya evm.TU.contig_25049.5 I 0.723
evm.TU.contig_25253.2 Carica papaya evm.TU.contig_25253.2 N 0.723
evm.TU.supercontig_265.6 Carica papaya evm.TU.supercontig_265.6 N 0.723
LjSGA_042497.2 Lotus japonicus LjSGA_042497.2 I 0.717
Thhalv10027038m.g Eutrema salsugineum Thhalv10027038m.g I 0.714
GLYMA18G05916 Glycine max GLYMA18G05916 N 0.711
Cucsa.224270 Cucumis sativus Cucsa.224270 I 0.711
Eucgr.B01824 Eucalyptus grandis Eucgr.B01824 I 0.711
evm.TU.contig_25982.2 Carica papaya evm.TU.contig_25982.2 I 0.711
evm.TU.contig_35868 Carica papaya evm.TU.contig_35868 N 0.711
evm.TU.contig_44957 Carica papaya evm.TU.contig_44957 I 0.711
evm.TU.supercontig_185.9 Carica papaya evm.TU.supercontig_185.9 I 0.711
evm.TU.supercontig_34.40 Carica papaya evm.TU.supercontig_34.40 N 0.711
evm.TU.supercontig_30.166 Carica papaya evm.TU.supercontig_30.166 I 0.708
Lus10032108.g Linum usitatissimum Lus10032108.g I 0.708
Thhalv10024162m.g Eutrema salsugineum Thhalv10024162m.g I 0.708
Gorai.013G155300 Gossypium raimondii Gorai.013G155300 N 0.706
Thhalv10002353m.g Eutrema salsugineum Thhalv10002353m.g I 0.705
Thhalv10021183m.g Eutrema salsugineum Thhalv10021183m.g I 0.705
PDK_20s1688321g001 Phoenix dactylifera PDK_20s1688321g001 N 0.705
TCM_025671 Theobroma cacao TCM_025671 I 0.702
evm.TU.contig_28448.1 Carica papaya evm.TU.contig_28448.1 N 0.702
evm.TU.supercontig_265.3 Carica papaya evm.TU.supercontig_265.3 N 0.702
evm.TU.supercontig_358.1 Carica papaya evm.TU.supercontig_358.1 N 0.702
Gorai.003G105500 Gossypium raimondii Gorai.003G105500 N 0.702
Gorai.004G229700 Gossypium raimondii Gorai.004G229700 N 0.702
evm.TU.supercontig_22.66 Carica papaya evm.TU.supercontig_22.66 N 0.700