Gorai.004G292000 (Gossypium raimondii)
MADS box

TF Information

Pfam ID Interpro ID Gene ID CIS-BP ID Sequence source
PF00319 (SRF-TF) IPR002100 Gorai.004G292000 T258401_2.00 JGI:Phytozome (2018-Apr-12)

Directly determined binding motifs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
No direct experiments

Motifs from related TFs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
AGL80
M06994_2.00 		Arabidopsis thaliana
TCACCA
TGGTGA		 Dap-seq
OMalley et al.(2016)
FEM111_col_a 		0.766 0.766
For this family, TFs with SR scores > 0.700 will likely have a similar motif

DNA Binding Domains

Protein ID Domain From To Sequence
Gorai.004G292000.1 MADS box 10 56

Links

Other MADS box family TFs
Other Gossypium raimondii TFs

126 Related TFs

Name Species Gene ID Motif Evidence SR
Score		 Action
evm.TU.contig_27586 Carica papaya evm.TU.contig_27586 I 0.909
Ca_06495 Cicer arietinum Ca_06495 I 0.886
VIT_14s0060g00300 Vitis vinifera VIT_14s0060g00300 I 0.851
Gorai.003G105500 Gossypium raimondii Gorai.003G105500 N 0.851
Gorai.004G229700 Gossypium raimondii Gorai.004G229700 N 0.851
GLYMA18G04760 Glycine max GLYMA18G04760 I 0.844
MTR_3g065100 Medicago truncatula MTR_3g065100 I 0.844
Ca_13275 Cicer arietinum Ca_13275 I 0.844
POPTR_0013s00350 Populus trichocarpa POPTR_0013s00350 I 0.830
Solyc01g102260.2 Solanum lycopersicum Solyc01g102260.2 I 0.830
Thhalv10012000m.g Eutrema salsugineum Thhalv10012000m.g I 0.830
GLYMA11G33460 Glycine max GLYMA11G33460 I 0.822
cassava15247.m1 Manihot esculenta cassava15247.m1 I 0.822
evm.TU.contig_38146 Carica papaya evm.TU.contig_38146 I 0.818
evm.TU.contig_40485 Carica papaya evm.TU.contig_40485 I 0.818
cassava19828.m1 Manihot esculenta cassava19828.m1 I 0.812
POPTR_0013s01880 Populus trichocarpa POPTR_0013s01880 I 0.809
evm.TU.contig_24608 Carica papaya evm.TU.contig_24608 I 0.809
Gorai.004G229600 Gossypium raimondii Gorai.004G229600 N 0.809
SapurV1A.0066s0310 Salix purpurea SapurV1A.0066s0310 I 0.809
Eucgr.E01737 Eucalyptus grandis Eucgr.E01737 I 0.804
PRUPE_ppa018168mg Prunus persica PRUPE_ppa018168mg I 0.800
Cla005226 Citrullus lanatus Cla005226 I 0.800
Pm004396 Prunus mume Pm004396 I 0.800
mgf026186m Mimulus guttatus mgf026186m I 0.795
evm.TU.contig_35009 Carica papaya evm.TU.contig_35009 I 0.795
gene22967-v1.0-hybrid Fragaria vesca gene22967-v1.0-hybrid I 0.792
Gorai.013G210200 Gossypium raimondii Gorai.013G210200 I 0.792
evm.TU.contig_36181 Carica papaya evm.TU.contig_36181 I 0.791
LjSGA_018236.1 Lotus japonicus LjSGA_018236.1 I 0.791
POPTR_0005s00420 Populus trichocarpa POPTR_0005s00420 I 0.787
TCM_026842 Theobroma cacao TCM_026842 I 0.787
30199.m000879 Ricinus communis 30199.m000879 I 0.787
evm.TU.contig_25253.2 Carica papaya evm.TU.contig_25253.2 N 0.787
evm.TU.supercontig_265.6 Carica papaya evm.TU.supercontig_265.6 N 0.787
LjT40B16.70.nc Lotus japonicus LjT40B16.70.nc I 0.787
Eucgr.E01734 Eucalyptus grandis Eucgr.E01734 I 0.783
Cucsa.050930 Cucumis sativus Cucsa.050930 I 0.778
Aquca_027_00068 Aquilegia coerulea Aquca_027_00068 I 0.778
Eucgr.B01824 Eucalyptus grandis Eucgr.B01824 I 0.778
evm.TU.supercontig_34.40 Carica papaya evm.TU.supercontig_34.40 N 0.778
LjSGA_147985.1 Lotus japonicus LjSGA_147985.1 I 0.778
Ciclev10006519m.g Citrus clementina Ciclev10006519m.g I 0.771
Ciclev10013728m.g Citrus clementina Ciclev10013728m.g I 0.771
Al_scaffold_0003_569 Arabidopsis lyrata Al_scaffold_0003_569 I 0.766
evm.TU.contig_28448.1 Carica papaya evm.TU.contig_28448.1 N 0.766
evm.TU.contig_31147 Carica papaya evm.TU.contig_31147 I 0.766
evm.TU.supercontig_1256.1 Carica papaya evm.TU.supercontig_1256.1 N 0.766
evm.TU.supercontig_265.3 Carica papaya evm.TU.supercontig_265.3 N 0.766
evm.TU.supercontig_358.1 Carica papaya evm.TU.supercontig_358.1 N 0.766
gene23924-v1.0-hybrid Fragaria vesca gene23924-v1.0-hybrid I 0.766
Lus10014578.g Linum usitatissimum Lus10014578.g I 0.766
MDP0000925348 Malus domestica MDP0000925348 I 0.766
evm.TU.supercontig_185.7 Carica papaya evm.TU.supercontig_185.7 I 0.762
Ciclev10024463m.g Citrus clementina Ciclev10024463m.g I 0.761
Eucgr.E01733 Eucalyptus grandis Eucgr.E01733 I 0.761
evm.TU.supercontig_1750.2 Carica papaya evm.TU.supercontig_1750.2 I 0.761
evm.TU.supercontig_265.1 Carica papaya evm.TU.supercontig_265.1 I 0.761
orange1.1g040642m.g Citrus sinensis orange1.1g040642m.g I 0.761
LjSGA_042497.2 Lotus japonicus LjSGA_042497.2 I 0.761
MTR_7g055940 Medicago truncatula MTR_7g055940 N 0.760
Pm003258 Prunus mume Pm003258 N 0.756
evm.TU.contig_26058.1 Carica papaya evm.TU.contig_26058.1 I 0.756
evm.TU.contig_26058.2 Carica papaya evm.TU.contig_26058.2 I 0.756
AGL80 Arabidopsis thaliana AT5G48670 D 0.750
Ca_08934 Cicer arietinum Ca_08934 I 0.750
30128.m008984 Ricinus communis 30128.m008984 I 0.750
Bostr.2570s0082 Boechera stricta Bostr.2570s0082 I 0.750
gene18029-v1.0-hybrid Fragaria vesca gene18029-v1.0-hybrid I 0.750
SapurV1A.0442s0180 Salix purpurea SapurV1A.0442s0180 I 0.750
SapurV1A.0442s0190 Salix purpurea SapurV1A.0442s0190 I 0.750
Aquca_007_00647 Aquilegia coerulea Aquca_007_00647 I 0.745
Bostr.2392s0039 Boechera stricta Bostr.2392s0039 I 0.745
Eucgr.E01736 Eucalyptus grandis Eucgr.E01736 I 0.745
evm.TU.contig_28448.4 Carica papaya evm.TU.contig_28448.4 I 0.745
evm.TU.contig_38760 Carica papaya evm.TU.contig_38760 N 0.745
evm.TU.contig_40499.2 Carica papaya evm.TU.contig_40499.2 I 0.745
evm.TU.supercontig_117.18 Carica papaya evm.TU.supercontig_117.18 I 0.745
evm.TU.supercontig_185.2 Carica papaya evm.TU.supercontig_185.2 I 0.745
evm.TU.supercontig_30.164 Carica papaya evm.TU.supercontig_30.164 N 0.745
gene22916-v1.0-hybrid Fragaria vesca gene22916-v1.0-hybrid I 0.745
Lus10032108.g Linum usitatissimum Lus10032108.g I 0.745
Thhalv10023873m.g Eutrema salsugineum Thhalv10023873m.g I 0.745
Thhalv10024119m.g Eutrema salsugineum Thhalv10024119m.g I 0.745
evm.TU.contig_24864.1 Carica papaya evm.TU.contig_24864.1 N 0.739
evm.TU.supercontig_185.8 Carica papaya evm.TU.supercontig_185.8 N 0.739
GSMUA_Achr3G05500_001 Musa acuminata GSMUA_Achr3G05500_001 I 0.733
evm.TU.contig_25049.1 Carica papaya evm.TU.contig_25049.1 I 0.733
evm.TU.contig_25049.2 Carica papaya evm.TU.contig_25049.2 N 0.733
evm.TU.contig_33457.2 Carica papaya evm.TU.contig_33457.2 I 0.733
evm.TU.contig_35762 Carica papaya evm.TU.contig_35762 N 0.733
evm.TU.supercontig_185.11 Carica papaya evm.TU.supercontig_185.11 I 0.733
TCM_025670 Theobroma cacao TCM_025670 I 0.729
MDP0000846004 Malus domestica MDP0000846004 I 0.729
Bo9g078450 Brassica oleracea Bo9g078450 I 0.723
Bra029469 Brassica rapa Bra029469 I 0.723
MTR_4g031910 Medicago truncatula MTR_4g031910 N 0.723
PRUPE_ppa019749mg Prunus persica PRUPE_ppa019749mg I 0.723
Pm003257 Prunus mume Pm003257 I 0.723
evm.TU.contig_25049.5 Carica papaya evm.TU.contig_25049.5 I 0.723
evm.TU.contig_28089 Carica papaya evm.TU.contig_28089 I 0.723
evm.TU.supercontig_117.19 Carica papaya evm.TU.supercontig_117.19 I 0.723
evm.TU.supercontig_1237.1 Carica papaya evm.TU.supercontig_1237.1 I 0.723
evm.TU.supercontig_185.12 Carica papaya evm.TU.supercontig_185.12 I 0.723
evm.TU.supercontig_30.166 Carica papaya evm.TU.supercontig_30.166 I 0.723
chr6.LjT19B22.120.nd Lotus japonicus chr6.LjT19B22.120.nd I 0.723
MTR_4g032260 Medicago truncatula MTR_4g032260 N 0.711
evm.TU.contig_25982.2 Carica papaya evm.TU.contig_25982.2 I 0.711
evm.TU.contig_44957 Carica papaya evm.TU.contig_44957 I 0.711
evm.TU.supercontig_185.9 Carica papaya evm.TU.supercontig_185.9 I 0.711
LjSGA_107301.1 Lotus japonicus LjSGA_107301.1 I 0.711
LjSGA_126766.1 Lotus japonicus LjSGA_126766.1 I 0.711
Bra018490 Brassica rapa Bra018490 I 0.708
evm.TU.supercontig_100.22 Carica papaya evm.TU.supercontig_100.22 N 0.708
MTR_8g036130 Medicago truncatula MTR_8g036130 N 0.705
LjSGA_057783.1 Lotus japonicus LjSGA_057783.1 I 0.704
PRUPE_ppa022799mg Prunus persica PRUPE_ppa022799mg N 0.702
TCM_025671 Theobroma cacao TCM_025671 I 0.702
TCM_025674 Theobroma cacao TCM_025674 N 0.702
Cla009163 Citrullus lanatus Cla009163 I 0.702
Cucsa.224270 Cucumis sativus Cucsa.224270 I 0.702
evm.TU.contig_25253.1 Carica papaya evm.TU.contig_25253.1 N 0.702
Gorai.004G054700 Gossypium raimondii Gorai.004G054700 N 0.702
Thhalv10022373m.g Eutrema salsugineum Thhalv10022373m.g I 0.702
Thhalv10024162m.g Eutrema salsugineum Thhalv10024162m.g I 0.702
evm.TU.supercontig_22.66 Carica papaya evm.TU.supercontig_22.66 N 0.700