Bra029469 (Brassica rapa)
MADS box

TF Information

Pfam ID Interpro ID Gene ID CIS-BP ID Sequence source Animal TF db
PF00319 (SRF-TF) IPR002100 Bra029469 T253344_2.00 Ensembl (2018-Dec-8) Link out

Directly determined binding motifs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
No direct experiments

Motifs from related TFs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
AGL80
M06994_2.00 		Arabidopsis thaliana
TCACCA
TGGTGA		 Dap-seq
OMalley et al.(2016)
FEM111_col_a 		0.896 0.896
For this family, TFs with SR scores > 0.700 will likely have a similar motif

DNA Binding Domains

Protein ID Domain From To Sequence
Bra029469.1-P MADS box 10 58

Links

Other MADS box family TFs
Other Brassica rapa TFs

114 Related TFs

Name Species Gene ID Motif Evidence SR
Score		 Action
Bo9g078450 Brassica oleracea Bo9g078450 I 1.000
Bra018490 Brassica rapa Bra018490 I 0.938
Thhalv10022373m.g Eutrema salsugineum Thhalv10022373m.g I 0.938
Bo2g104810 Brassica oleracea Bo2g104810 I 0.917
Bostr.2570s0082 Boechera stricta Bostr.2570s0082 I 0.917
Cagra.1772s0003 Capsella grandiflora Cagra.1772s0003 I 0.917
Carubv10014232m.g Capsella rubella Carubv10014232m.g I 0.917
Thhalv10023873m.g Eutrema salsugineum Thhalv10023873m.g I 0.917
Thhalv10024119m.g Eutrema salsugineum Thhalv10024119m.g I 0.917
AGL80 Arabidopsis thaliana AT5G48670 D 0.896
Thhalv10024162m.g Eutrema salsugineum Thhalv10024162m.g I 0.875
LjSGA_104570.1 Lotus japonicus LjSGA_104570.1 I 0.862
30128.m008984 Ricinus communis 30128.m008984 I 0.854
GLYMA18G04760 Glycine max GLYMA18G04760 I 0.844
MTR_3g065100 Medicago truncatula MTR_3g065100 I 0.844
Ca_13275 Cicer arietinum Ca_13275 I 0.844
Ca_06495 Cicer arietinum Ca_06495 I 0.841
POPTR_0005s00420 Populus trichocarpa POPTR_0005s00420 I 0.833
POPTR_0013s01880 Populus trichocarpa POPTR_0013s01880 I 0.833
TCM_026842 Theobroma cacao TCM_026842 I 0.833
Thhalv10019481m.g Eutrema salsugineum Thhalv10019481m.g I 0.833
GLYMA11G33460 Glycine max GLYMA11G33460 I 0.822
POPTR_0013s00350 Populus trichocarpa POPTR_0013s00350 I 0.812
VIT_14s0060g00300 Vitis vinifera VIT_14s0060g00300 I 0.812
cassava19828.m1 Manihot esculenta cassava19828.m1 I 0.812
Ciclev10006519m.g Citrus clementina Ciclev10006519m.g I 0.812
Ciclev10013728m.g Citrus clementina Ciclev10013728m.g I 0.812
SapurV1A.0066s0310 Salix purpurea SapurV1A.0066s0310 I 0.809
PRUPE_ppa018168mg Prunus persica PRUPE_ppa018168mg I 0.800
Pm004396 Prunus mume Pm004396 I 0.800
mgf026186m Mimulus guttatus mgf026186m I 0.795
gene18029-v1.0-hybrid Fragaria vesca gene18029-v1.0-hybrid I 0.792
gene22916-v1.0-hybrid Fragaria vesca gene22916-v1.0-hybrid I 0.792
gene22967-v1.0-hybrid Fragaria vesca gene22967-v1.0-hybrid I 0.792
Lus10014578.g Linum usitatissimum Lus10014578.g I 0.792
Thhalv10012000m.g Eutrema salsugineum Thhalv10012000m.g I 0.792
30199.m000879 Ricinus communis 30199.m000879 I 0.787
evm.TU.supercontig_117.18 Carica papaya evm.TU.supercontig_117.18 I 0.787
Eucgr.E01737 Eucalyptus grandis Eucgr.E01737 I 0.783
Bra041022 Brassica rapa Bra041022 I 0.778
Cla005226 Citrullus lanatus Cla005226 I 0.778
Cucsa.050930 Cucumis sativus Cucsa.050930 I 0.778
Lus10032108.g Linum usitatissimum Lus10032108.g I 0.771
MDP0000846004 Malus domestica MDP0000846004 I 0.771
chr6.LjT19B22.120.nd Lotus japonicus chr6.LjT19B22.120.nd I 0.771
LjSGA_018236.1 Lotus japonicus LjSGA_018236.1 I 0.767
Ciclev10024463m.g Citrus clementina Ciclev10024463m.g I 0.761
orange1.1g040642m.g Citrus sinensis orange1.1g040642m.g I 0.761
Eucgr.B01824 Eucalyptus grandis Eucgr.B01824 I 0.756
Thhalv10002350m.g Eutrema salsugineum Thhalv10002350m.g I 0.756
Al_scaffold_0003_569 Arabidopsis lyrata Al_scaffold_0003_569 I 0.750
Solyc01g102260.2 Solanum lycopersicum Solyc01g102260.2 I 0.750
TCM_025670 Theobroma cacao TCM_025670 I 0.750
Ca_08369 Cicer arietinum Ca_08369 N 0.750
Bostr.2392s0039 Boechera stricta Bostr.2392s0039 I 0.750
gene23924-v1.0-hybrid Fragaria vesca gene23924-v1.0-hybrid I 0.750
PRUPE_ppa019749mg Prunus persica PRUPE_ppa019749mg I 0.745
Pm003257 Prunus mume Pm003257 I 0.745
Thhalv10002346m.g Eutrema salsugineum Thhalv10002346m.g I 0.745
Thhalv10019451m.g Eutrema salsugineum Thhalv10019451m.g I 0.745
Thhalv10019579m.g Eutrema salsugineum Thhalv10019579m.g I 0.745
Thhalv10019751m.g Eutrema salsugineum Thhalv10019751m.g I 0.745
LjSGA_057783.1 Lotus japonicus LjSGA_057783.1 I 0.741
LjSGA_147985.1 Lotus japonicus LjSGA_147985.1 I 0.741
Eucgr.E01733 Eucalyptus grandis Eucgr.E01733 I 0.739
Eucgr.E01734 Eucalyptus grandis Eucgr.E01734 I 0.739
Thhalv10019731m.g Eutrema salsugineum Thhalv10019731m.g I 0.738
Aquca_027_00068 Aquilegia coerulea Aquca_027_00068 I 0.733
LjSGA_107301.1 Lotus japonicus LjSGA_107301.1 I 0.733
LjSGA_126766.1 Lotus japonicus LjSGA_126766.1 I 0.733
AT3G05860 Arabidopsis thaliana AT3G05860 I 0.729
Bo5g145000 Brassica oleracea Bo5g145000 I 0.729
Bostr.2570s0083 Boechera stricta Bostr.2570s0083 I 0.729
evm.TU.supercontig_117.19 Carica papaya evm.TU.supercontig_117.19 I 0.729
MDP0000925348 Malus domestica MDP0000925348 I 0.729
SapurV1A.0442s0180 Salix purpurea SapurV1A.0442s0180 I 0.729
SapurV1A.0442s0190 Salix purpurea SapurV1A.0442s0190 I 0.729
LjT40B16.70.nc Lotus japonicus LjT40B16.70.nc I 0.729
Ca_08934 Cicer arietinum Ca_08934 I 0.727
evm.TU.contig_27586 Carica papaya evm.TU.contig_27586 I 0.727
evm.TU.contig_35265 Carica papaya evm.TU.contig_35265 I 0.727
evm.TU.contig_38146 Carica papaya evm.TU.contig_38146 I 0.727
evm.TU.contig_43368 Carica papaya evm.TU.contig_43368 I 0.727
Thhalv10002352m.g Eutrema salsugineum Thhalv10002352m.g I 0.727
TCM_025671 Theobroma cacao TCM_025671 I 0.723
evm.TU.contig_25049.5 Carica papaya evm.TU.contig_25049.5 I 0.723
Gorai.004G292000 Gossypium raimondii Gorai.004G292000 I 0.723
Thhalv10019449m.g Eutrema salsugineum Thhalv10019449m.g I 0.723
Thhalv10019516m.g Eutrema salsugineum Thhalv10019516m.g I 0.723
evm.TU.supercontig_1750.2 Carica papaya evm.TU.supercontig_1750.2 I 0.717
evm.TU.supercontig_265.1 Carica papaya evm.TU.supercontig_265.1 I 0.717
Thhalv10002789m.g Eutrema salsugineum Thhalv10002789m.g I 0.717
LjSGA_042497.2 Lotus japonicus LjSGA_042497.2 I 0.717
Pm003258 Prunus mume Pm003258 N 0.711
cassava15247.m1 Manihot esculenta cassava15247.m1 I 0.711
evm.TU.contig_26058.1 Carica papaya evm.TU.contig_26058.1 I 0.711
evm.TU.contig_26058.2 Carica papaya evm.TU.contig_26058.2 I 0.711
evm.TU.contig_40499.2 Carica papaya evm.TU.contig_40499.2 I 0.711
Thhalv10002956m.g Eutrema salsugineum Thhalv10002956m.g I 0.711
Thhalv10002996m.g Eutrema salsugineum Thhalv10002996m.g I 0.711
GSMUA_Achr2G18410_001 Musa acuminata GSMUA_Achr2G18410_001 N 0.710
MTR_1g084950 Medicago truncatula MTR_1g084950 N 0.708
MTR_4g028720 Medicago truncatula MTR_4g028720 N 0.708
TCM_026845 Theobroma cacao TCM_026845 I 0.708
Eucgr.E01736 Eucalyptus grandis Eucgr.E01736 I 0.708
evm.TU.contig_28448.4 Carica papaya evm.TU.contig_28448.4 I 0.708
evm.TU.contig_36543 Carica papaya evm.TU.contig_36543 I 0.708
Lus10022316.g Linum usitatissimum Lus10022316.g I 0.708
Thhalv10002353m.g Eutrema salsugineum Thhalv10002353m.g I 0.705
MDP0000123878 Malus domestica MDP0000123878 I 0.704
MDP0000726295 Malus domestica MDP0000726295 I 0.704
Thhalv10002349m.g Eutrema salsugineum Thhalv10002349m.g I 0.702
Thhalv10019810m.g Eutrema salsugineum Thhalv10019810m.g I 0.702
Thhalv10019833m.g Eutrema salsugineum Thhalv10019833m.g I 0.702