Lus10022316.g (Linum usitatissimum)
MADS box

TF Information

Pfam ID Interpro ID Gene ID CIS-BP ID Sequence source
PF00319 (SRF-TF) IPR002100 Lus10022316.g T258583_2.00 JGI:Phytozome (2018-Apr-12)

Directly determined binding motifs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
No direct experiments

Motifs from related TFs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
AGL80
M06994_2.00 		Arabidopsis thaliana
TCACCA
TGGTGA		 Dap-seq
OMalley et al.(2016)
FEM111_col_a 		0.729 0.729
For this family, TFs with SR scores > 0.700 will likely have a similar motif

DNA Binding Domains

Protein ID Domain From To Sequence
Lus10022316 MADS box 10 60

Links

Other MADS box family TFs
Other Linum usitatissimum TFs

43 Related TFs

Name Species Gene ID Motif Evidence SR
Score		 Action
Lus10014883.g Linum usitatissimum Lus10014883.g I 0.896
Cla005226 Citrullus lanatus Cla005226 I 0.822
evm.TU.contig_27586 Carica papaya evm.TU.contig_27586 I 0.818
Lus10022325.g Linum usitatissimum Lus10022325.g N 0.809
Lus10014578.g Linum usitatissimum Lus10014578.g I 0.792
Lus10032108.g Linum usitatissimum Lus10032108.g I 0.792
Eucgr.E01737 Eucalyptus grandis Eucgr.E01737 I 0.783
GLYMA18G04760 Glycine max GLYMA18G04760 I 0.778
Cucsa.050930 Cucumis sativus Cucsa.050930 I 0.778
POPTR_0013s00350 Populus trichocarpa POPTR_0013s00350 I 0.771
Eucgr.E01733 Eucalyptus grandis Eucgr.E01733 I 0.761
Eucgr.E01734 Eucalyptus grandis Eucgr.E01734 I 0.761
GLYMA11G33460 Glycine max GLYMA11G33460 I 0.756
POPTR_0013s01880 Populus trichocarpa POPTR_0013s01880 I 0.750
VIT_14s0060g00300 Vitis vinifera VIT_14s0060g00300 I 0.750
MTR_3g065100 Medicago truncatula MTR_3g065100 I 0.733
Ca_13275 Cicer arietinum Ca_13275 I 0.733
AGL80 Arabidopsis thaliana AT5G48670 D 0.729
cassava19828.m1 Manihot esculenta cassava19828.m1 I 0.729
Bostr.2570s0082 Boechera stricta Bostr.2570s0082 I 0.729
Ciclev10006519m.g Citrus clementina Ciclev10006519m.g I 0.729
Ciclev10013728m.g Citrus clementina Ciclev10013728m.g I 0.729
Eucgr.E01736 Eucalyptus grandis Eucgr.E01736 I 0.729
SapurV1A.0066s0310 Salix purpurea SapurV1A.0066s0310 I 0.729
Thhalv10022373m.g Eutrema salsugineum Thhalv10022373m.g I 0.729
Thhalv10023873m.g Eutrema salsugineum Thhalv10023873m.g I 0.729
Thhalv10024119m.g Eutrema salsugineum Thhalv10024119m.g I 0.729
evm.TU.contig_38146 Carica papaya evm.TU.contig_38146 I 0.727
PRUPE_ppa018168mg Prunus persica PRUPE_ppa018168mg I 0.711
Pm004396 Prunus mume Pm004396 I 0.711
Eucgr.B01824 Eucalyptus grandis Eucgr.B01824 I 0.711
Bo9g078450 Brassica oleracea Bo9g078450 I 0.708
Bra018490 Brassica rapa Bra018490 I 0.708
Bra029469 Brassica rapa Bra029469 I 0.708
POPTR_0005s00420 Populus trichocarpa POPTR_0005s00420 I 0.708
TCM_026842 Theobroma cacao TCM_026842 I 0.708
30128.m008984 Ricinus communis 30128.m008984 I 0.708
gene22967-v1.0-hybrid Fragaria vesca gene22967-v1.0-hybrid I 0.708
MDP0000846004 Malus domestica MDP0000846004 I 0.708
Ca_06495 Cicer arietinum Ca_06495 I 0.705
LjSGA_057783.1 Lotus japonicus LjSGA_057783.1 I 0.704
LjSGA_147985.1 Lotus japonicus LjSGA_147985.1 I 0.704
30199.m000879 Ricinus communis 30199.m000879 I 0.702