evm.TU.contig_38146 (Carica papaya)
MADS box

TF Information

Pfam ID Interpro ID Gene ID CIS-BP ID Sequence source
PF00319 (SRF-TF) IPR002100 evm.TU.contig_38146 T258111_2.00 JGI:Phytozome (2018-Apr-12)

Directly determined binding motifs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
No direct experiments

Motifs from related TFs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
AGL80
M06994_2.00 		Arabidopsis thaliana
TCACCA
TGGTGA		 Dap-seq
OMalley et al.(2016)
FEM111_col_a 		0.773 0.773
For this family, TFs with SR scores > 0.700 will likely have a similar motif

DNA Binding Domains

Protein ID Domain From To Sequence
evm.TU.contig_38146.1 MADS box 10 32

Links

Other MADS box family TFs
Other Carica papaya TFs

76 Related TFs

Name Species Gene ID Motif Evidence SR
Score		 Action
Gorai.004G292000 Gossypium raimondii Gorai.004G292000 I 0.818
POPTR_0013s01880 Populus trichocarpa POPTR_0013s01880 I 0.818
TCM_026842 Theobroma cacao TCM_026842 I 0.818
evm.TU.contig_24608 Carica papaya evm.TU.contig_24608 I 0.818
VIT_14s0060g00300 Vitis vinifera VIT_14s0060g00300 I 0.818
SapurV1A.0066s0310 Salix purpurea SapurV1A.0066s0310 I 0.818
gene22967-v1.0-hybrid Fragaria vesca gene22967-v1.0-hybrid I 0.818
evm.TU.contig_31147 Carica papaya evm.TU.contig_31147 I 0.818
Eucgr.E01736 Eucalyptus grandis Eucgr.E01736 I 0.773
evm.TU.supercontig_30.164 Carica papaya evm.TU.supercontig_30.164 N 0.773
Eucgr.E01733 Eucalyptus grandis Eucgr.E01733 I 0.773
evm.TU.supercontig_1237.1 Carica papaya evm.TU.supercontig_1237.1 I 0.773
Bostr.2392s0039 Boechera stricta Bostr.2392s0039 I 0.773
Al_scaffold_0003_569 Arabidopsis lyrata Al_scaffold_0003_569 I 0.773
evm.TU.contig_38760 Carica papaya evm.TU.contig_38760 N 0.773
Cucsa.224270 Cucumis sativus Cucsa.224270 I 0.773
evm.TU.contig_28448.4 Carica papaya evm.TU.contig_28448.4 I 0.773
evm.TU.contig_26058.2 Carica papaya evm.TU.contig_26058.2 I 0.773
gene23924-v1.0-hybrid Fragaria vesca gene23924-v1.0-hybrid I 0.773
evm.TU.supercontig_265.1 Carica papaya evm.TU.supercontig_265.1 I 0.773
evm.TU.supercontig_185.2 Carica papaya evm.TU.supercontig_185.2 I 0.773
Cla009163 Citrullus lanatus Cla009163 I 0.773
evm.TU.supercontig_1256.1 Carica papaya evm.TU.supercontig_1256.1 N 0.773
Thhalv10012000m.g Eutrema salsugineum Thhalv10012000m.g I 0.773
POPTR_0013s00350 Populus trichocarpa POPTR_0013s00350 I 0.773
Thhalv10023873m.g Eutrema salsugineum Thhalv10023873m.g I 0.773
Thhalv10024119m.g Eutrema salsugineum Thhalv10024119m.g I 0.773
LjT40B16.70.nc Lotus japonicus LjT40B16.70.nc I 0.773
evm.TU.supercontig_118.30 Carica papaya evm.TU.supercontig_118.30 I 0.773
PRUPE_ppa022799mg Prunus persica PRUPE_ppa022799mg N 0.773
Solyc01g102260.2 Solanum lycopersicum Solyc01g102260.2 I 0.773
Ca_06495 Cicer arietinum Ca_06495 I 0.773
Pm003258 Prunus mume Pm003258 N 0.773
evm.TU.contig_40499.2 Carica papaya evm.TU.contig_40499.2 I 0.773
evm.TU.supercontig_1750.2 Carica papaya evm.TU.supercontig_1750.2 I 0.773
evm.TU.supercontig_117.18 Carica papaya evm.TU.supercontig_117.18 I 0.773
MDP0000925348 Malus domestica MDP0000925348 I 0.773
evm.TU.supercontig_185.12 Carica papaya evm.TU.supercontig_185.12 I 0.727
evm.TU.supercontig_265.6 Carica papaya evm.TU.supercontig_265.6 N 0.727
Lus10014578.g Linum usitatissimum Lus10014578.g I 0.727
MDP0000846004 Malus domestica MDP0000846004 I 0.727
Thhalv10021183m.g Eutrema salsugineum Thhalv10021183m.g I 0.727
LjSGA_018236.1 Lotus japonicus LjSGA_018236.1 I 0.727
Lus10032108.g Linum usitatissimum Lus10032108.g I 0.727
Lus10022316.g Linum usitatissimum Lus10022316.g I 0.727
evm.TU.supercontig_358.1 Carica papaya evm.TU.supercontig_358.1 N 0.727
gene22916-v1.0-hybrid Fragaria vesca gene22916-v1.0-hybrid I 0.727
Lus10014883.g Linum usitatissimum Lus10014883.g I 0.727
evm.TU.supercontig_30.166 Carica papaya evm.TU.supercontig_30.166 I 0.727
evm.TU.contig_35265 Carica papaya evm.TU.contig_35265 I 0.727
TCM_025676 Theobroma cacao TCM_025676 N 0.727
TCM_025671 Theobroma cacao TCM_025671 I 0.727
TCM_042848 Theobroma cacao TCM_042848 N 0.727
Ca_13275 Cicer arietinum Ca_13275 I 0.727
Cucsa.050930 Cucumis sativus Cucsa.050930 I 0.727
MTR_3g466980 Medicago truncatula MTR_3g466980 N 0.727
MTR_3g065100 Medicago truncatula MTR_3g065100 I 0.727
Bo9g078450 Brassica oleracea Bo9g078450 I 0.727
AT3G05860 Arabidopsis thaliana AT3G05860 I 0.727
Bra029469 Brassica rapa Bra029469 I 0.727
GLYMA03G19880 Glycine max GLYMA03G19880 N 0.727
GLYMA18G04760 Glycine max GLYMA18G04760 I 0.727
Eucgr.B01824 Eucalyptus grandis Eucgr.B01824 I 0.727
evm.TU.contig_25049.2 Carica papaya evm.TU.contig_25049.2 N 0.727
evm.TU.contig_40164 Carica papaya evm.TU.contig_40164 N 0.727
evm.TU.contig_37084 Carica papaya evm.TU.contig_37084 I 0.727
evm.TU.contig_40485 Carica papaya evm.TU.contig_40485 I 0.727
evm.TU.contig_43368 Carica papaya evm.TU.contig_43368 I 0.727
evm.TU.contig_44957 Carica papaya evm.TU.contig_44957 I 0.727
evm.TU.contig_35868 Carica papaya evm.TU.contig_35868 N 0.727
evm.TU.contig_35009 Carica papaya evm.TU.contig_35009 I 0.727
evm.TU.contig_25253.1 Carica papaya evm.TU.contig_25253.1 N 0.727
evm.TU.contig_27586 Carica papaya evm.TU.contig_27586 I 0.727
evm.TU.contig_28089 Carica papaya evm.TU.contig_28089 I 0.727
evm.TU.contig_28448.1 Carica papaya evm.TU.contig_28448.1 N 0.727
evm.TU.supercontig_117.19 Carica papaya evm.TU.supercontig_117.19 I 0.727