Thhalv10021183m.g (Eutrema salsugineum)
MADS box

TF Information

Pfam ID Interpro ID Gene ID CIS-BP ID Sequence source
PF00319 (SRF-TF) IPR002100 Thhalv10021183m.g T259169_2.00 JGI:Phytozome (2018-Apr-12)

Directly determined binding motifs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
No direct experiments

Motifs from related TFs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
AGL80
M06994_2.00 		Arabidopsis thaliana
TCACCA
TGGTGA		 Dap-seq
OMalley et al.(2016)
FEM111_col_a 		0.705 0.705
For this family, TFs with SR scores > 0.700 will likely have a similar motif

DNA Binding Domains

Protein ID Domain From To Sequence
Thhalv10021183m MADS box 10 55

Links

Other MADS box family TFs
Other Eutrema salsugineum TFs

11 Related TFs

Name Species Gene ID Motif Evidence SR
Score		 Action
AT3G05860 Arabidopsis thaliana AT3G05860 I 0.864
Bo5g145010 Brassica oleracea Bo5g145010 N 0.864
Bra039404 Brassica rapa Bra039404 N 0.864
Bostr.2570s0083 Boechera stricta Bostr.2570s0083 I 0.841
Cagra.1772s0002 Capsella grandiflora Cagra.1772s0002 N 0.729
Carubv10015167m.g Capsella rubella Carubv10015167m.g N 0.729
TCM_026842 Theobroma cacao TCM_026842 I 0.727
evm.TU.contig_38146 Carica papaya evm.TU.contig_38146 I 0.727
POPTR_0013s01880 Populus trichocarpa POPTR_0013s01880 I 0.705
Solyc01g102260.2 Solanum lycopersicum Solyc01g102260.2 I 0.705
SapurV1A.0066s0310 Salix purpurea SapurV1A.0066s0310 I 0.705