Bostr.2570s0083 (Boechera stricta)
MADS box

TF Information

Pfam ID Interpro ID Gene ID CIS-BP ID Sequence source
PF00319 (SRF-TF) IPR002100 Bostr.2570s0083 T257609_2.00 JGI:Phytozome (2018-Apr-12)

Directly determined binding motifs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
No direct experiments

Motifs from related TFs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
AGL80
M06994_2.00 		Arabidopsis thaliana
TCACCA
TGGTGA		 Dap-seq
OMalley et al.(2016)
FEM111_col_a 		0.771 0.771
For this family, TFs with SR scores > 0.700 will likely have a similar motif

DNA Binding Domains

Protein ID Domain From To Sequence
Bostr.2570s0083.1.p MADS box 10 58

Links

Other MADS box family TFs
Other Boechera stricta TFs

30 Related TFs

Name Species Gene ID Motif Evidence SR
Score		 Action
AT3G05860 Arabidopsis thaliana AT3G05860 I 0.938
Thhalv10021183m.g Eutrema salsugineum Thhalv10021183m.g I 0.841
Cagra.1772s0002 Capsella grandiflora Cagra.1772s0002 N 0.833
Carubv10015167m.g Capsella rubella Carubv10015167m.g N 0.833
AGL80 Arabidopsis thaliana AT5G48670 D 0.771
Bo5g145010 Brassica oleracea Bo5g145010 N 0.771
Bra039404 Brassica rapa Bra039404 N 0.771
Bostr.2570s0082 Boechera stricta Bostr.2570s0082 I 0.771
Thhalv10023873m.g Eutrema salsugineum Thhalv10023873m.g I 0.771
Thhalv10024119m.g Eutrema salsugineum Thhalv10024119m.g I 0.771
Cagra.1772s0003 Capsella grandiflora Cagra.1772s0003 I 0.750
Carubv10014232m.g Capsella rubella Carubv10014232m.g I 0.750
Bo2g104810 Brassica oleracea Bo2g104810 I 0.729
Bo9g078450 Brassica oleracea Bo9g078450 I 0.729
Bra018490 Brassica rapa Bra018490 I 0.729
Bra029469 Brassica rapa Bra029469 I 0.729
POPTR_0005s00420 Populus trichocarpa POPTR_0005s00420 I 0.729
POPTR_0013s00350 Populus trichocarpa POPTR_0013s00350 I 0.729
POPTR_0013s01880 Populus trichocarpa POPTR_0013s01880 I 0.729
TCM_026842 Theobroma cacao TCM_026842 I 0.729
TCM_026845 Theobroma cacao TCM_026845 I 0.729
VIT_14s0060g00300 Vitis vinifera VIT_14s0060g00300 I 0.729
30128.m008984 Ricinus communis 30128.m008984 I 0.729
cassava19828.m1 Manihot esculenta cassava19828.m1 I 0.729
Ciclev10006519m.g Citrus clementina Ciclev10006519m.g I 0.729
Ciclev10013728m.g Citrus clementina Ciclev10013728m.g I 0.729
Thhalv10022373m.g Eutrema salsugineum Thhalv10022373m.g I 0.729
gene22967-v1.0-hybrid Fragaria vesca gene22967-v1.0-hybrid I 0.708
SapurV1A.0066s0310 Salix purpurea SapurV1A.0066s0310 I 0.708
Thhalv10024162m.g Eutrema salsugineum Thhalv10024162m.g I 0.708