Bo2g104810 (Brassica oleracea)
MADS box

TF Information

Pfam ID Interpro ID Gene ID CIS-BP ID Sequence source Animal TF db
PF00319 (SRF-TF) IPR002100 Bo2g104810 T253070_2.00 Ensembl (2018-Dec-8) Link out

Directly determined binding motifs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
No direct experiments

Motifs from related TFs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
AGL80
M06994_2.00 		Arabidopsis thaliana
TCACCA
TGGTGA		 Dap-seq
OMalley et al.(2016)
FEM111_col_a 		0.854 0.854
For this family, TFs with SR scores > 0.700 will likely have a similar motif

DNA Binding Domains

Protein ID Domain From To Sequence
Bo2g104810.1 MADS box 10 58

Links

Other MADS box family TFs
Other Brassica oleracea TFs

92 Related TFs

Name Species Gene ID Motif Evidence SR
Score		 Action
Bra018490 Brassica rapa Bra018490 I 0.979
Bo9g078450 Brassica oleracea Bo9g078450 I 0.917
Bra029469 Brassica rapa Bra029469 I 0.917
Bostr.2570s0082 Boechera stricta Bostr.2570s0082 I 0.917
Cagra.1772s0003 Capsella grandiflora Cagra.1772s0003 I 0.896
Carubv10014232m.g Capsella rubella Carubv10014232m.g I 0.896
Thhalv10022373m.g Eutrema salsugineum Thhalv10022373m.g I 0.896
Thhalv10023873m.g Eutrema salsugineum Thhalv10023873m.g I 0.896
Thhalv10024119m.g Eutrema salsugineum Thhalv10024119m.g I 0.896
AGL80 Arabidopsis thaliana AT5G48670 D 0.854
cassava19828.m1 Manihot esculenta cassava19828.m1 I 0.854
Thhalv10024162m.g Eutrema salsugineum Thhalv10024162m.g I 0.854
POPTR_0005s00420 Populus trichocarpa POPTR_0005s00420 I 0.833
gene22916-v1.0-hybrid Fragaria vesca gene22916-v1.0-hybrid I 0.833
MTR_3g065100 Medicago truncatula MTR_3g065100 I 0.822
Ca_13275 Cicer arietinum Ca_13275 I 0.822
POPTR_0013s00350 Populus trichocarpa POPTR_0013s00350 I 0.812
VIT_14s0060g00300 Vitis vinifera VIT_14s0060g00300 I 0.812
MDP0000846004 Malus domestica MDP0000846004 I 0.812
Thhalv10019481m.g Eutrema salsugineum Thhalv10019481m.g I 0.812
GLYMA11G33460 Glycine max GLYMA11G33460 I 0.800
POPTR_0013s01880 Populus trichocarpa POPTR_0013s01880 I 0.792
TCM_026842 Theobroma cacao TCM_026842 I 0.792
Ciclev10006519m.g Citrus clementina Ciclev10006519m.g I 0.792
Ciclev10013728m.g Citrus clementina Ciclev10013728m.g I 0.792
gene18029-v1.0-hybrid Fragaria vesca gene18029-v1.0-hybrid I 0.792
gene22967-v1.0-hybrid Fragaria vesca gene22967-v1.0-hybrid I 0.792
Lus10014578.g Linum usitatissimum Lus10014578.g I 0.792
chr6.LjT19B22.120.nd Lotus japonicus chr6.LjT19B22.120.nd I 0.792
Bra041022 Brassica rapa Bra041022 I 0.778
Cla005226 Citrullus lanatus Cla005226 I 0.778
GLYMA18G04760 Glycine max GLYMA18G04760 I 0.771
30128.m008984 Ricinus communis 30128.m008984 I 0.771
Cucsa.050930 Cucumis sativus Cucsa.050930 I 0.771
Lus10032108.g Linum usitatissimum Lus10032108.g I 0.771
SapurV1A.0066s0310 Salix purpurea SapurV1A.0066s0310 I 0.771
SapurV1A.0442s0180 Salix purpurea SapurV1A.0442s0180 I 0.771
SapurV1A.0442s0190 Salix purpurea SapurV1A.0442s0190 I 0.771
PRUPE_ppa019749mg Prunus persica PRUPE_ppa019749mg I 0.766
Pm003257 Prunus mume Pm003257 I 0.766
30199.m000879 Ricinus communis 30199.m000879 I 0.766
Eucgr.E01737 Eucalyptus grandis Eucgr.E01737 I 0.761
PRUPE_ppa018168mg Prunus persica PRUPE_ppa018168mg I 0.756
Pm004396 Prunus mume Pm004396 I 0.756
evm.TU.supercontig_117.19 Carica papaya evm.TU.supercontig_117.19 I 0.750
gene23924-v1.0-hybrid Fragaria vesca gene23924-v1.0-hybrid I 0.750
Thhalv10012000m.g Eutrema salsugineum Thhalv10012000m.g I 0.750
LjSGA_057783.1 Lotus japonicus LjSGA_057783.1 I 0.741
Eucgr.B01824 Eucalyptus grandis Eucgr.B01824 I 0.733
Al_scaffold_0003_569 Arabidopsis lyrata Al_scaffold_0003_569 I 0.729
AT3G05860 Arabidopsis thaliana AT3G05860 I 0.729
Bo5g145000 Brassica oleracea Bo5g145000 I 0.729
Solyc01g102260.2 Solanum lycopersicum Solyc01g102260.2 I 0.729
Bostr.2392s0039 Boechera stricta Bostr.2392s0039 I 0.729
Bostr.2570s0083 Boechera stricta Bostr.2570s0083 I 0.729
MDP0000925348 Malus domestica MDP0000925348 I 0.729
Ca_08934 Cicer arietinum Ca_08934 I 0.727
mgf026186m Mimulus guttatus mgf026186m I 0.727
evm.TU.contig_27586 Carica papaya evm.TU.contig_27586 I 0.727
evm.TU.contig_25253.5 Carica papaya evm.TU.contig_25253.5 I 0.724
evm.TU.contig_40008 Carica papaya evm.TU.contig_40008 I 0.724
evm.TU.contig_25049.5 Carica papaya evm.TU.contig_25049.5 I 0.723
Thhalv10002346m.g Eutrema salsugineum Thhalv10002346m.g I 0.723
Thhalv10019451m.g Eutrema salsugineum Thhalv10019451m.g I 0.723
Thhalv10019579m.g Eutrema salsugineum Thhalv10019579m.g I 0.723
Thhalv10019751m.g Eutrema salsugineum Thhalv10019751m.g I 0.723
Thhalv10019810m.g Eutrema salsugineum Thhalv10019810m.g I 0.723
Ciclev10024463m.g Citrus clementina Ciclev10024463m.g I 0.717
Eucgr.E01734 Eucalyptus grandis Eucgr.E01734 I 0.717
evm.TU.supercontig_1750.2 Carica papaya evm.TU.supercontig_1750.2 I 0.717
evm.TU.supercontig_265.1 Carica papaya evm.TU.supercontig_265.1 I 0.717
orange1.1g040642m.g Citrus sinensis orange1.1g040642m.g I 0.717
evm.TU.contig_25049.1 Carica papaya evm.TU.contig_25049.1 I 0.711
evm.TU.contig_26058.1 Carica papaya evm.TU.contig_26058.1 I 0.711
LjSGA_107301.1 Lotus japonicus LjSGA_107301.1 I 0.711
LjSGA_126766.1 Lotus japonicus LjSGA_126766.1 I 0.711
GLYMA18G05990 Glycine max GLYMA18G05990 N 0.708
MTR_1g084950 Medicago truncatula MTR_1g084950 N 0.708
MTR_4g028720 Medicago truncatula MTR_4g028720 N 0.708
TCM_025670 Theobroma cacao TCM_025670 I 0.708
Ca_06495 Cicer arietinum Ca_06495 I 0.708
Ca_08369 Cicer arietinum Ca_08369 N 0.708
evm.TU.contig_28448.4 Carica papaya evm.TU.contig_28448.4 I 0.708
evm.TU.supercontig_117.18 Carica papaya evm.TU.supercontig_117.18 I 0.708
gene04949-v1.0-hybrid Fragaria vesca gene04949-v1.0-hybrid I 0.708
Gorai.004G054700 Gossypium raimondii Gorai.004G054700 N 0.708
LjT40B16.70.nc Lotus japonicus LjT40B16.70.nc I 0.708
evm.TU.contig_32899.1 Carica papaya evm.TU.contig_32899.1 I 0.706
LjSGA_147985.1 Lotus japonicus LjSGA_147985.1 I 0.704
Gorai.003G105500 Gossypium raimondii Gorai.003G105500 N 0.702
Thhalv10019449m.g Eutrema salsugineum Thhalv10019449m.g I 0.702
Thhalv10019516m.g Eutrema salsugineum Thhalv10019516m.g I 0.702