chr6.LjT19B22.120.nd (Lotus japonicus)
MADS box

TF Information

Pfam ID Interpro ID Gene ID CIS-BP ID Sequence source
PF00319 (SRF-TF) IPR002100 chr6.LjT19B22.120.nd T259349_2.00 Superfamily (2010-Oct-26)

Directly determined binding motifs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
No direct experiments

Motifs from related TFs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
AGL80
M06994_2.00 		Arabidopsis thaliana
TCACCA
TGGTGA		 Dap-seq
OMalley et al.(2016)
FEM111_col_a 		0.804 0.804
For this family, TFs with SR scores > 0.700 will likely have a similar motif

DNA Binding Domains

Protein ID Domain From To Sequence
chr6.LjT19B22.120.nd MADS box 10 56

Links

Other MADS box family TFs
Other Lotus japonicus TFs

106 Related TFs

Name Species Gene ID Motif Evidence SR
Score		 Action
MTR_3g065100 Medicago truncatula MTR_3g065100 I 0.889
Ca_13275 Cicer arietinum Ca_13275 I 0.889
GLYMA18G04760 Glycine max GLYMA18G04760 I 0.867
LjSGA_104570.1 Lotus japonicus LjSGA_104570.1 I 0.862
gene22916-v1.0-hybrid Fragaria vesca gene22916-v1.0-hybrid I 0.854
TCM_026842 Theobroma cacao TCM_026842 I 0.848
GLYMA11G33460 Glycine max GLYMA11G33460 I 0.844
Cucsa.050930 Cucumis sativus Cucsa.050930 I 0.844
LjSGA_107301.1 Lotus japonicus LjSGA_107301.1 I 0.844
LjSGA_126766.1 Lotus japonicus LjSGA_126766.1 I 0.844
LjSGA_018236.1 Lotus japonicus LjSGA_018236.1 I 0.837
POPTR_0005s00420 Populus trichocarpa POPTR_0005s00420 I 0.833
cassava19828.m1 Manihot esculenta cassava19828.m1 I 0.833
SapurV1A.0066s0310 Salix purpurea SapurV1A.0066s0310 I 0.830
PRUPE_ppa018168mg Prunus persica PRUPE_ppa018168mg I 0.822
Pm004396 Prunus mume Pm004396 I 0.822
LjT40B16.70.nc Lotus japonicus LjT40B16.70.nc I 0.822
Ca_08934 Cicer arietinum Ca_08934 I 0.818
Gorai.013G168300 Gossypium raimondii Gorai.013G168300 I 0.816
LjSGA_057783.1 Lotus japonicus LjSGA_057783.1 I 0.815
LjSGA_147985.1 Lotus japonicus LjSGA_147985.1 I 0.815
Bra018490 Brassica rapa Bra018490 I 0.812
POPTR_0013s01880 Populus trichocarpa POPTR_0013s01880 I 0.812
30128.m008984 Ricinus communis 30128.m008984 I 0.812
gene22967-v1.0-hybrid Fragaria vesca gene22967-v1.0-hybrid I 0.812
Solyc01g102260.2 Solanum lycopersicum Solyc01g102260.2 I 0.804
Cla005226 Citrullus lanatus Cla005226 I 0.800
MDP0000925348 Malus domestica MDP0000925348 I 0.800
Thhalv10027038m.g Eutrema salsugineum Thhalv10027038m.g I 0.800
Ca_06495 Cicer arietinum Ca_06495 I 0.795
Bo2g104810 Brassica oleracea Bo2g104810 I 0.792
POPTR_0013s00350 Populus trichocarpa POPTR_0013s00350 I 0.792
VIT_14s0060g00300 Vitis vinifera VIT_14s0060g00300 I 0.792
Lus10014578.g Linum usitatissimum Lus10014578.g I 0.792
MDP0000846004 Malus domestica MDP0000846004 I 0.792
30199.m000879 Ricinus communis 30199.m000879 I 0.787
Ciclev10024463m.g Citrus clementina Ciclev10024463m.g I 0.783
Eucgr.E01737 Eucalyptus grandis Eucgr.E01737 I 0.783
orange1.1g040642m.g Citrus sinensis orange1.1g040642m.g I 0.783
LjSGA_042497.2 Lotus japonicus LjSGA_042497.2 I 0.783
Bo5g145000 Brassica oleracea Bo5g145000 I 0.778
Bra041022 Brassica rapa Bra041022 I 0.778
Cla009163 Citrullus lanatus Cla009163 I 0.778
mgf026186m Mimulus guttatus mgf026186m I 0.773
evm.TU.contig_27586 Carica papaya evm.TU.contig_27586 I 0.773
evm.TU.contig_43368 Carica papaya evm.TU.contig_43368 I 0.773
AGL80 Arabidopsis thaliana AT5G48670 D 0.771
Bo9g078450 Brassica oleracea Bo9g078450 I 0.771
Bra029469 Brassica rapa Bra029469 I 0.771
Bostr.2570s0082 Boechera stricta Bostr.2570s0082 I 0.771
Ciclev10006519m.g Citrus clementina Ciclev10006519m.g I 0.771
Ciclev10013728m.g Citrus clementina Ciclev10013728m.g I 0.771
Lus10032108.g Linum usitatissimum Lus10032108.g I 0.771
MTR_2g035610 Medicago truncatula MTR_2g035610 N 0.761
GLYMA18G05916 Glycine max GLYMA18G05916 N 0.756
Bostr.2392s0039 Boechera stricta Bostr.2392s0039 I 0.756
Gorai.013G210400 Gossypium raimondii Gorai.013G210400 I 0.756
MTR_4g031910 Medicago truncatula MTR_4g031910 N 0.750
MTR_8g036130 Medicago truncatula MTR_8g036130 N 0.750
Cagra.1772s0003 Capsella grandiflora Cagra.1772s0003 I 0.750
Carubv10014232m.g Capsella rubella Carubv10014232m.g I 0.750
gene18029-v1.0-hybrid Fragaria vesca gene18029-v1.0-hybrid I 0.750
gene23924-v1.0-hybrid Fragaria vesca gene23924-v1.0-hybrid I 0.750
Gorai.013G210200 Gossypium raimondii Gorai.013G210200 I 0.750
SapurV1A.0442s0180 Salix purpurea SapurV1A.0442s0180 I 0.750
SapurV1A.0442s0190 Salix purpurea SapurV1A.0442s0190 I 0.750
Thhalv10022373m.g Eutrema salsugineum Thhalv10022373m.g I 0.750
Thhalv10023873m.g Eutrema salsugineum Thhalv10023873m.g I 0.750
Thhalv10024119m.g Eutrema salsugineum Thhalv10024119m.g I 0.750
evm.TU.supercontig_117.18 Carica papaya evm.TU.supercontig_117.18 I 0.745
Al_scaffold_0003_569 Arabidopsis lyrata Al_scaffold_0003_569 I 0.744
Eucgr.E01733 Eucalyptus grandis Eucgr.E01733 I 0.739
Eucgr.E01736 Eucalyptus grandis Eucgr.E01736 I 0.739
evm.TU.contig_37084 Carica papaya evm.TU.contig_37084 I 0.739
evm.TU.supercontig_1750.2 Carica papaya evm.TU.supercontig_1750.2 I 0.739
evm.TU.supercontig_265.1 Carica papaya evm.TU.supercontig_265.1 I 0.739
MTR_4g032260 Medicago truncatula MTR_4g032260 N 0.733
MTR_4g032290 Medicago truncatula MTR_4g032290 N 0.733
Aquca_027_00068 Aquilegia coerulea Aquca_027_00068 I 0.733
evm.TU.contig_26058.1 Carica papaya evm.TU.contig_26058.1 I 0.733
evm.TU.contig_40499.2 Carica papaya evm.TU.contig_40499.2 I 0.733
evm.TU.supercontig_117.19 Carica papaya evm.TU.supercontig_117.19 I 0.733
Gorai.013G210700 Gossypium raimondii Gorai.013G210700 N 0.733
Ca_08369 Cicer arietinum Ca_08369 N 0.729
GLYMA11G30640 Glycine max GLYMA11G30640 N 0.727
evm.TU.supercontig_1750.1 Carica papaya evm.TU.supercontig_1750.1 I 0.727
TCM_025671 Theobroma cacao TCM_025671 I 0.723
evm.TU.contig_28448.4 Carica papaya evm.TU.contig_28448.4 I 0.723
Gorai.004G292000 Gossypium raimondii Gorai.004G292000 I 0.723
Eucgr.E01734 Eucalyptus grandis Eucgr.E01734 I 0.717
evm.TU.supercontig_1237.1 Carica papaya evm.TU.supercontig_1237.1 I 0.717
GSMUA_Achr3G05500_001 Musa acuminata GSMUA_Achr3G05500_001 I 0.711
Aquca_007_00647 Aquilegia coerulea Aquca_007_00647 I 0.711
evm.TU.contig_25049.1 Carica papaya evm.TU.contig_25049.1 I 0.711
evm.TU.contig_25982.2 Carica papaya evm.TU.contig_25982.2 I 0.711
GLYMA18G05990 Glycine max GLYMA18G05990 N 0.708
MTR_1g084950 Medicago truncatula MTR_1g084950 N 0.708
Thhalv10024162m.g Eutrema salsugineum Thhalv10024162m.g I 0.708
cassava38612.m1 Manihot esculenta cassava38612.m1 N 0.707
POPTR_0006s21630 Populus trichocarpa POPTR_0006s21630 N 0.705
POPTR_0016s06850 Populus trichocarpa POPTR_0016s06850 N 0.705
evm.TU.contig_31147 Carica papaya evm.TU.contig_31147 I 0.705
PRUPE_ppa019749mg Prunus persica PRUPE_ppa019749mg I 0.702
Pm003257 Prunus mume Pm003257 I 0.702
evm.TU.contig_25049.5 Carica papaya evm.TU.contig_25049.5 I 0.702
evm.TU.supercontig_22.66 Carica papaya evm.TU.supercontig_22.66 N 0.700