Al_scaffold_0003_569 (Arabidopsis lyrata)
MADS box

TF Information

Pfam ID Interpro ID Gene ID CIS-BP ID Sequence source Animal TF db
PF00319 (SRF-TF) IPR002100 Al_scaffold_0003_569 T252783_2.00 Ensembl (2018-Dec-8) Link out

Directly determined binding motifs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
No direct experiments

Motifs from related TFs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
AGL80
M06994_2.00 		Arabidopsis thaliana
TCACCA
TGGTGA		 Dap-seq
OMalley et al.(2016)
FEM111_col_a 		0.860 0.860
For this family, TFs with SR scores > 0.700 will likely have a similar motif

DNA Binding Domains

Protein ID Domain From To Sequence
Al_scaffold_0003_569 MADS box 10 52

Links

Other MADS box family TFs
Other Arabidopsis lyrata TFs

77 Related TFs

Name Species Gene ID Motif Evidence SR
Score		 Action
Thhalv10012000m.g Eutrema salsugineum Thhalv10012000m.g I 0.833
Bostr.2392s0039 Boechera stricta Bostr.2392s0039 I 0.822
evm.TU.contig_27586 Carica papaya evm.TU.contig_27586 I 0.818
evm.TU.contig_43368 Carica papaya evm.TU.contig_43368 I 0.818
TCM_026842 Theobroma cacao TCM_026842 I 0.814
Bostr.2570s0082 Boechera stricta Bostr.2570s0082 I 0.812
Ca_06495 Cicer arietinum Ca_06495 I 0.795
Solyc01g102260.2 Solanum lycopersicum Solyc01g102260.2 I 0.791
Thhalv10022373m.g Eutrema salsugineum Thhalv10022373m.g I 0.791
evm.TU.contig_37084 Carica papaya evm.TU.contig_37084 I 0.783
Eucgr.B01824 Eucalyptus grandis Eucgr.B01824 I 0.778
evm.TU.contig_35265 Carica papaya evm.TU.contig_35265 I 0.773
evm.TU.contig_38146 Carica papaya evm.TU.contig_38146 I 0.773
AGL80 Arabidopsis thaliana AT5G48670 D 0.771
evm.TU.contig_38760 Carica papaya evm.TU.contig_38760 N 0.767
evm.TU.supercontig_30.164 Carica papaya evm.TU.supercontig_30.164 N 0.767
Gorai.004G292000 Gossypium raimondii Gorai.004G292000 I 0.766
LjSGA_104570.1 Lotus japonicus LjSGA_104570.1 I 0.759
MTR_3g065100 Medicago truncatula MTR_3g065100 I 0.756
PRUPE_ppa018168mg Prunus persica PRUPE_ppa018168mg I 0.756
Ca_13275 Cicer arietinum Ca_13275 I 0.756
Pm004396 Prunus mume Pm004396 I 0.756
cassava15247.m1 Manihot esculenta cassava15247.m1 I 0.756
evm.TU.supercontig_117.19 Carica papaya evm.TU.supercontig_117.19 I 0.756
MDP0000925348 Malus domestica MDP0000925348 I 0.756
Bo9g078450 Brassica oleracea Bo9g078450 I 0.750
Bra018490 Brassica rapa Bra018490 I 0.750
Bra029469 Brassica rapa Bra029469 I 0.750
Cagra.1772s0003 Capsella grandiflora Cagra.1772s0003 I 0.750
Carubv10014232m.g Capsella rubella Carubv10014232m.g I 0.750
Thhalv10023873m.g Eutrema salsugineum Thhalv10023873m.g I 0.750
Thhalv10024119m.g Eutrema salsugineum Thhalv10024119m.g I 0.750
evm.TU.contig_28089 Carica papaya evm.TU.contig_28089 I 0.744
evm.TU.contig_28448.4 Carica papaya evm.TU.contig_28448.4 I 0.744
evm.TU.supercontig_185.12 Carica papaya evm.TU.supercontig_185.12 I 0.744
Lus10014578.g Linum usitatissimum Lus10014578.g I 0.744
chr6.LjT19B22.120.nd Lotus japonicus chr6.LjT19B22.120.nd I 0.744
LjSGA_147985.1 Lotus japonicus LjSGA_147985.1 I 0.741
GLYMA18G04760 Glycine max GLYMA18G04760 I 0.733
Bo2g104810 Brassica oleracea Bo2g104810 I 0.729
mgf026186m Mimulus guttatus mgf026186m I 0.727
evm.TU.contig_35009 Carica papaya evm.TU.contig_35009 I 0.727
evm.TU.contig_40485 Carica papaya evm.TU.contig_40485 I 0.727
evm.TU.supercontig_1750.1 Carica papaya evm.TU.supercontig_1750.1 I 0.727
30199.m000879 Ricinus communis 30199.m000879 I 0.723
evm.TU.contig_24608 Carica papaya evm.TU.contig_24608 I 0.723
SapurV1A.0066s0310 Salix purpurea SapurV1A.0066s0310 I 0.723
Aquca_007_00647 Aquilegia coerulea Aquca_007_00647 I 0.721
evm.TU.supercontig_1237.1 Carica papaya evm.TU.supercontig_1237.1 I 0.721
Gorai.004G229700 Gossypium raimondii Gorai.004G229700 N 0.721
LjSGA_018236.1 Lotus japonicus LjSGA_018236.1 I 0.721
LjT40B16.70.nc Lotus japonicus LjT40B16.70.nc I 0.721
Ciclev10024463m.g Citrus clementina Ciclev10024463m.g I 0.717
Eucgr.E01737 Eucalyptus grandis Eucgr.E01737 I 0.717
orange1.1g040642m.g Citrus sinensis orange1.1g040642m.g I 0.717
GLYMA11G33460 Glycine max GLYMA11G33460 I 0.711
Cla005226 Citrullus lanatus Cla005226 I 0.711
Cucsa.050930 Cucumis sativus Cucsa.050930 I 0.711
Aquca_027_00068 Aquilegia coerulea Aquca_027_00068 I 0.711
evm.TU.contig_40499.2 Carica papaya evm.TU.contig_40499.2 I 0.711
GSMUA_Achr2G18410_001 Musa acuminata GSMUA_Achr2G18410_001 N 0.710
POPTR_0013s00350 Populus trichocarpa POPTR_0013s00350 I 0.708
POPTR_0013s01880 Populus trichocarpa POPTR_0013s01880 I 0.708
VIT_14s0060g00300 Vitis vinifera VIT_14s0060g00300 I 0.708
30128.m008984 Ricinus communis 30128.m008984 I 0.708
cassava19828.m1 Manihot esculenta cassava19828.m1 I 0.708
Ciclev10006519m.g Citrus clementina Ciclev10006519m.g I 0.708
Ciclev10013728m.g Citrus clementina Ciclev10013728m.g I 0.708
Gorai.013G210200 Gossypium raimondii Gorai.013G210200 I 0.708
Thhalv10024162m.g Eutrema salsugineum Thhalv10024162m.g I 0.708
Ca_08934 Cicer arietinum Ca_08934 I 0.705
evm.TU.contig_25253.1 Carica papaya evm.TU.contig_25253.1 N 0.705
PRUPE_ppa019749mg Prunus persica PRUPE_ppa019749mg I 0.702
Pm003257 Prunus mume Pm003257 I 0.702
evm.TU.contig_25253.2 Carica papaya evm.TU.contig_25253.2 N 0.702
evm.TU.supercontig_265.6 Carica papaya evm.TU.supercontig_265.6 N 0.702
Gorai.003G105500 Gossypium raimondii Gorai.003G105500 N 0.702