MTR_3g065100 (Medicago truncatula)
MADS box

TF Information

Pfam ID Interpro ID Gene ID CIS-BP ID Sequence source Animal TF db
PF00319 (SRF-TF) IPR002100 MTR_3g065100 T254748_2.00 Ensembl (2018-Dec-8) Link out

Directly determined binding motifs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
No direct experiments

Motifs from related TFs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
AGL80
M06994_2.00 		Arabidopsis thaliana
TCACCA
TGGTGA		 Dap-seq
OMalley et al.(2016)
FEM111_col_a 		0.844 0.844
For this family, TFs with SR scores > 0.700 will likely have a similar motif

DNA Binding Domains

Protein ID Domain From To Sequence
AES70937 MADS box 10 55

Links

Other MADS box family TFs
Other Medicago truncatula TFs

132 Related TFs

Name Species Gene ID Motif Evidence SR
Score		 Action
Ca_13275 Cicer arietinum Ca_13275 I 1.000
GLYMA18G04760 Glycine max GLYMA18G04760 I 0.956
GLYMA11G33460 Glycine max GLYMA11G33460 I 0.933
POPTR_0005s00420 Populus trichocarpa POPTR_0005s00420 I 0.933
POPTR_0013s00350 Populus trichocarpa POPTR_0013s00350 I 0.911
Solyc01g102260.2 Solanum lycopersicum Solyc01g102260.2 I 0.911
VIT_14s0060g00300 Vitis vinifera VIT_14s0060g00300 I 0.911
LjT40B16.70.nc Lotus japonicus LjT40B16.70.nc I 0.911
POPTR_0013s01880 Populus trichocarpa POPTR_0013s01880 I 0.889
gene22967-v1.0-hybrid Fragaria vesca gene22967-v1.0-hybrid I 0.889
SapurV1A.0066s0310 Salix purpurea SapurV1A.0066s0310 I 0.889
chr6.LjT19B22.120.nd Lotus japonicus chr6.LjT19B22.120.nd I 0.889
PRUPE_ppa018168mg Prunus persica PRUPE_ppa018168mg I 0.867
TCM_026842 Theobroma cacao TCM_026842 I 0.867
Ca_06495 Cicer arietinum Ca_06495 I 0.867
Pm004396 Prunus mume Pm004396 I 0.867
gene22916-v1.0-hybrid Fragaria vesca gene22916-v1.0-hybrid I 0.867
MDP0000925348 Malus domestica MDP0000925348 I 0.867
cassava19828.m1 Manihot esculenta cassava19828.m1 I 0.854
LjSGA_057783.1 Lotus japonicus LjSGA_057783.1 I 0.852
30199.m000879 Ricinus communis 30199.m000879 I 0.851
Bo9g078450 Brassica oleracea Bo9g078450 I 0.844
Bra018490 Brassica rapa Bra018490 I 0.844
Bra029469 Brassica rapa Bra029469 I 0.844
Cla005226 Citrullus lanatus Cla005226 I 0.844
Cucsa.050930 Cucumis sativus Cucsa.050930 I 0.844
evm.TU.supercontig_117.18 Carica papaya evm.TU.supercontig_117.18 I 0.844
gene23924-v1.0-hybrid Fragaria vesca gene23924-v1.0-hybrid I 0.844
Gorai.004G292000 Gossypium raimondii Gorai.004G292000 I 0.844
Lus10014578.g Linum usitatissimum Lus10014578.g I 0.844
Ciclev10006519m.g Citrus clementina Ciclev10006519m.g I 0.833
Ciclev10013728m.g Citrus clementina Ciclev10013728m.g I 0.833
Ciclev10024463m.g Citrus clementina Ciclev10024463m.g I 0.826
orange1.1g040642m.g Citrus sinensis orange1.1g040642m.g I 0.826
Bo2g104810 Brassica oleracea Bo2g104810 I 0.822
evm.TU.contig_28448.4 Carica papaya evm.TU.contig_28448.4 I 0.822
Lus10032108.g Linum usitatissimum Lus10032108.g I 0.822
Thhalv10022373m.g Eutrema salsugineum Thhalv10022373m.g I 0.822
Thhalv10023873m.g Eutrema salsugineum Thhalv10023873m.g I 0.822
Thhalv10024119m.g Eutrema salsugineum Thhalv10024119m.g I 0.822
mgf026186m Mimulus guttatus mgf026186m I 0.818
evm.TU.contig_27586 Carica papaya evm.TU.contig_27586 I 0.818
Eucgr.E01737 Eucalyptus grandis Eucgr.E01737 I 0.804
evm.TU.supercontig_1750.2 Carica papaya evm.TU.supercontig_1750.2 I 0.804
evm.TU.supercontig_265.1 Carica papaya evm.TU.supercontig_265.1 I 0.804
Bostr.2392s0039 Boechera stricta Bostr.2392s0039 I 0.800
evm.TU.contig_26058.1 Carica papaya evm.TU.contig_26058.1 I 0.800
evm.TU.contig_40499.2 Carica papaya evm.TU.contig_40499.2 I 0.800
evm.TU.supercontig_1237.1 Carica papaya evm.TU.supercontig_1237.1 I 0.800
AGL80 Arabidopsis thaliana AT5G48670 D 0.792
30128.m008984 Ricinus communis 30128.m008984 I 0.792
Bostr.2570s0082 Boechera stricta Bostr.2570s0082 I 0.792
gene18029-v1.0-hybrid Fragaria vesca gene18029-v1.0-hybrid I 0.792
MDP0000846004 Malus domestica MDP0000846004 I 0.792
SapurV1A.0442s0180 Salix purpurea SapurV1A.0442s0180 I 0.792
SapurV1A.0442s0190 Salix purpurea SapurV1A.0442s0190 I 0.792
Eucgr.E01734 Eucalyptus grandis Eucgr.E01734 I 0.783
Bo5g145000 Brassica oleracea Bo5g145000 I 0.778
Bra041022 Brassica rapa Bra041022 I 0.778
TCM_025671 Theobroma cacao TCM_025671 I 0.778
TCM_026845 Theobroma cacao TCM_026845 I 0.778
cassava15247.m1 Manihot esculenta cassava15247.m1 I 0.778
Aquca_027_00068 Aquilegia coerulea Aquca_027_00068 I 0.778
Eucgr.E01733 Eucalyptus grandis Eucgr.E01733 I 0.778
Eucgr.E01736 Eucalyptus grandis Eucgr.E01736 I 0.778
evm.TU.contig_25049.1 Carica papaya evm.TU.contig_25049.1 I 0.778
evm.TU.supercontig_30.166 Carica papaya evm.TU.supercontig_30.166 I 0.778
Thhalv10012000m.g Eutrema salsugineum Thhalv10012000m.g I 0.778
Thhalv10024162m.g Eutrema salsugineum Thhalv10024162m.g I 0.778
LjSGA_107301.1 Lotus japonicus LjSGA_107301.1 I 0.778
LjSGA_126766.1 Lotus japonicus LjSGA_126766.1 I 0.778
Cagra.1772s0003 Capsella grandiflora Cagra.1772s0003 I 0.771
Carubv10014232m.g Capsella rubella Carubv10014232m.g I 0.771
evm.TU.contig_36181 Carica papaya evm.TU.contig_36181 I 0.767
evm.TU.contig_25049.5 Carica papaya evm.TU.contig_25049.5 I 0.766
Al_scaffold_0003_569 Arabidopsis lyrata Al_scaffold_0003_569 I 0.756
GSMUA_Achr3G05500_001 Musa acuminata GSMUA_Achr3G05500_001 I 0.756
TCM_042799 Theobroma cacao TCM_042799 I 0.756
Cla009163 Citrullus lanatus Cla009163 I 0.756
Aquca_007_00647 Aquilegia coerulea Aquca_007_00647 I 0.756
evm.TU.contig_24608 Carica papaya evm.TU.contig_24608 I 0.756
evm.TU.contig_25982.2 Carica papaya evm.TU.contig_25982.2 I 0.756
evm.TU.contig_31147 Carica papaya evm.TU.contig_31147 I 0.756
evm.TU.contig_33457.2 Carica papaya evm.TU.contig_33457.2 I 0.756
evm.TU.contig_44957 Carica papaya evm.TU.contig_44957 I 0.756
evm.TU.supercontig_117.19 Carica papaya evm.TU.supercontig_117.19 I 0.756
evm.TU.supercontig_185.11 Carica papaya evm.TU.supercontig_185.11 I 0.756
evm.TU.supercontig_185.2 Carica papaya evm.TU.supercontig_185.2 I 0.756
evm.TU.supercontig_185.9 Carica papaya evm.TU.supercontig_185.9 I 0.756
TCM_025670 Theobroma cacao TCM_025670 I 0.750
Ca_08934 Cicer arietinum Ca_08934 I 0.750
LjSGA_147985.1 Lotus japonicus LjSGA_147985.1 I 0.741
GLYMA18G05916 Glycine max GLYMA18G05916 N 0.733
GSMUA_Achr2G18400_001 Musa acuminata GSMUA_Achr2G18400_001 N 0.733
MTR_4g031910 Medicago truncatula MTR_4g031910 N 0.733
evm.TU.contig_26058.2 Carica papaya evm.TU.contig_26058.2 I 0.733
evm.TU.supercontig_118.30 Carica papaya evm.TU.supercontig_118.30 I 0.733
evm.TU.supercontig_265.6 Carica papaya evm.TU.supercontig_265.6 N 0.733
gene15899-v1.0-hybrid Fragaria vesca gene15899-v1.0-hybrid N 0.733
Lus10022316.g Linum usitatissimum Lus10022316.g I 0.733
LjSGA_018236.1 Lotus japonicus LjSGA_018236.1 I 0.733
evm.TU.contig_35009 Carica papaya evm.TU.contig_35009 I 0.727
evm.TU.contig_38146 Carica papaya evm.TU.contig_38146 I 0.727
evm.TU.contig_40485 Carica papaya evm.TU.contig_40485 I 0.727
Thhalv10002352m.g Eutrema salsugineum Thhalv10002352m.g I 0.727
PRUPE_ppa019749mg Prunus persica PRUPE_ppa019749mg I 0.723
Pm003257 Prunus mume Pm003257 I 0.723
LjSGA_042497.2 Lotus japonicus LjSGA_042497.2 I 0.717
GSMUA_Achr3G08500_001 Musa acuminata GSMUA_Achr3G08500_001 N 0.711
MTR_1g084950 Medicago truncatula MTR_1g084950 N 0.711
PRUPE_ppa017207mg Prunus persica PRUPE_ppa017207mg N 0.711
TCM_042848 Theobroma cacao TCM_042848 N 0.711
Eucgr.B01824 Eucalyptus grandis Eucgr.B01824 I 0.711
evm.TU.contig_25049.2 Carica papaya evm.TU.contig_25049.2 N 0.711
evm.TU.contig_28089 Carica papaya evm.TU.contig_28089 I 0.711
evm.TU.contig_28448.1 Carica papaya evm.TU.contig_28448.1 N 0.711
evm.TU.contig_38760 Carica papaya evm.TU.contig_38760 N 0.711
evm.TU.contig_40164 Carica papaya evm.TU.contig_40164 N 0.711
evm.TU.supercontig_185.12 Carica papaya evm.TU.supercontig_185.12 I 0.711
evm.TU.supercontig_30.164 Carica papaya evm.TU.supercontig_30.164 N 0.711
evm.TU.supercontig_358.1 Carica papaya evm.TU.supercontig_358.1 N 0.711
Gorai.004G054700 Gossypium raimondii Gorai.004G054700 N 0.711
Gorai.004G229700 Gossypium raimondii Gorai.004G229700 N 0.711
Thhalv10002350m.g Eutrema salsugineum Thhalv10002350m.g I 0.711
Gorai.013G210200 Gossypium raimondii Gorai.013G210200 I 0.708
Thhalv10019481m.g Eutrema salsugineum Thhalv10019481m.g I 0.708
evm.TU.contig_32899.1 Carica papaya evm.TU.contig_32899.1 I 0.706
GLYMA11G30640 Glycine max GLYMA11G30640 N 0.705
Thhalv10002353m.g Eutrema salsugineum Thhalv10002353m.g I 0.705
evm.TU.contig_25253.2 Carica papaya evm.TU.contig_25253.2 N 0.702
evm.TU.contig_46342 Carica papaya evm.TU.contig_46342 N 0.700
evm.TU.supercontig_30.163 Carica papaya evm.TU.supercontig_30.163 N 0.700