Eucgr.E01733 (Eucalyptus grandis)
MADS box

TF Information

Pfam ID Interpro ID Gene ID CIS-BP ID Sequence source
PF00319 (SRF-TF) IPR002100 Eucgr.E01733 T257947_2.00 JGI:Phytozome (2018-Apr-12)

Directly determined binding motifs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
No direct experiments

Motifs from related TFs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
AGL80
M06994_2.00 		Arabidopsis thaliana
TCACCA
TGGTGA		 Dap-seq
OMalley et al.(2016)
FEM111_col_a 		0.761 0.761
For this family, TFs with SR scores > 0.700 will likely have a similar motif

DNA Binding Domains

Protein ID Domain From To Sequence
Eucgr.E01733.1 MADS box 10 56

Links

Other MADS box family TFs
Other Eucalyptus grandis TFs

74 Related TFs

Name Species Gene ID Motif Evidence SR
Score		 Action
Eucgr.E01736 Eucalyptus grandis Eucgr.E01736 I 0.957
Eucgr.E01737 Eucalyptus grandis Eucgr.E01737 I 0.957
Eucgr.E01734 Eucalyptus grandis Eucgr.E01734 I 0.935
Cla005226 Citrullus lanatus Cla005226 I 0.844
POPTR_0013s00350 Populus trichocarpa POPTR_0013s00350 I 0.826
SapurV1A.0066s0310 Salix purpurea SapurV1A.0066s0310 I 0.826
GLYMA18G04760 Glycine max GLYMA18G04760 I 0.822
POPTR_0013s01880 Populus trichocarpa POPTR_0013s01880 I 0.804
TCM_026842 Theobroma cacao TCM_026842 I 0.804
VIT_14s0060g00300 Vitis vinifera VIT_14s0060g00300 I 0.804
Lus10014578.g Linum usitatissimum Lus10014578.g I 0.804
GLYMA11G33460 Glycine max GLYMA11G33460 I 0.800
Cucsa.050930 Cucumis sativus Cucsa.050930 I 0.800
30199.m000879 Ricinus communis 30199.m000879 I 0.787
Lus10032108.g Linum usitatissimum Lus10032108.g I 0.783
MTR_3g065100 Medicago truncatula MTR_3g065100 I 0.778
PRUPE_ppa018168mg Prunus persica PRUPE_ppa018168mg I 0.778
Ca_13275 Cicer arietinum Ca_13275 I 0.778
Pm004396 Prunus mume Pm004396 I 0.778
evm.TU.contig_27586 Carica papaya evm.TU.contig_27586 I 0.773
evm.TU.contig_38146 Carica papaya evm.TU.contig_38146 I 0.773
POPTR_0005s00420 Populus trichocarpa POPTR_0005s00420 I 0.761
Solyc01g102260.2 Solanum lycopersicum Solyc01g102260.2 I 0.761
evm.TU.supercontig_117.19 Carica papaya evm.TU.supercontig_117.19 I 0.761
gene22967-v1.0-hybrid Fragaria vesca gene22967-v1.0-hybrid I 0.761
Gorai.004G292000 Gossypium raimondii Gorai.004G292000 I 0.761
Lus10022316.g Linum usitatissimum Lus10022316.g I 0.761
Thhalv10023873m.g Eutrema salsugineum Thhalv10023873m.g I 0.761
Thhalv10024119m.g Eutrema salsugineum Thhalv10024119m.g I 0.761
Ca_06495 Cicer arietinum Ca_06495 I 0.750
30128.m008984 Ricinus communis 30128.m008984 I 0.750
cassava19828.m1 Manihot esculenta cassava19828.m1 I 0.750
LjSGA_057783.1 Lotus japonicus LjSGA_057783.1 I 0.741
Bo9g078450 Brassica oleracea Bo9g078450 I 0.739
Bra029469 Brassica rapa Bra029469 I 0.739
TCM_025671 Theobroma cacao TCM_025671 I 0.739
TCM_026845 Theobroma cacao TCM_026845 I 0.739
Aquca_007_00647 Aquilegia coerulea Aquca_007_00647 I 0.739
evm.TU.contig_28448.4 Carica papaya evm.TU.contig_28448.4 I 0.739
evm.TU.contig_40499.2 Carica papaya evm.TU.contig_40499.2 I 0.739
evm.TU.supercontig_1750.2 Carica papaya evm.TU.supercontig_1750.2 I 0.739
evm.TU.supercontig_265.1 Carica papaya evm.TU.supercontig_265.1 I 0.739
gene23924-v1.0-hybrid Fragaria vesca gene23924-v1.0-hybrid I 0.739
MDP0000925348 Malus domestica MDP0000925348 I 0.739
chr6.LjT19B22.120.nd Lotus japonicus chr6.LjT19B22.120.nd I 0.739
LjT40B16.70.nc Lotus japonicus LjT40B16.70.nc I 0.739
Aquca_027_00068 Aquilegia coerulea Aquca_027_00068 I 0.733
AGL80 Arabidopsis thaliana AT5G48670 D 0.729
Bostr.2570s0082 Boechera stricta Bostr.2570s0082 I 0.729
Ciclev10006519m.g Citrus clementina Ciclev10006519m.g I 0.729
Ciclev10013728m.g Citrus clementina Ciclev10013728m.g I 0.729
Ca_08934 Cicer arietinum Ca_08934 I 0.727
mgf026186m Mimulus guttatus mgf026186m I 0.727
evm.TU.contig_40485 Carica papaya evm.TU.contig_40485 I 0.727
Bostr.2392s0039 Boechera stricta Bostr.2392s0039 I 0.717
Ciclev10024463m.g Citrus clementina Ciclev10024463m.g I 0.717
evm.TU.supercontig_117.18 Carica papaya evm.TU.supercontig_117.18 I 0.717
evm.TU.supercontig_1237.1 Carica papaya evm.TU.supercontig_1237.1 I 0.717
orange1.1g040642m.g Citrus sinensis orange1.1g040642m.g I 0.717
Thhalv10012000m.g Eutrema salsugineum Thhalv10012000m.g I 0.717
Thhalv10022373m.g Eutrema salsugineum Thhalv10022373m.g I 0.717
GLYMA18G05916 Glycine max GLYMA18G05916 N 0.711
PRUPE_ppa017207mg Prunus persica PRUPE_ppa017207mg N 0.711
Eucgr.B01824 Eucalyptus grandis Eucgr.B01824 I 0.711
Bra018490 Brassica rapa Bra018490 I 0.708
gene18029-v1.0-hybrid Fragaria vesca gene18029-v1.0-hybrid I 0.708
Lus10014883.g Linum usitatissimum Lus10014883.g I 0.708
MDP0000846004 Malus domestica MDP0000846004 I 0.708
SapurV1A.0442s0180 Salix purpurea SapurV1A.0442s0180 I 0.708
SapurV1A.0442s0190 Salix purpurea SapurV1A.0442s0190 I 0.708
LjSGA_147985.1 Lotus japonicus LjSGA_147985.1 I 0.704
PRUPE_ppa019749mg Prunus persica PRUPE_ppa019749mg I 0.702
Pm003257 Prunus mume Pm003257 I 0.702
evm.TU.contig_25049.5 Carica papaya evm.TU.contig_25049.5 I 0.702