evm.TU.supercontig_117.19 (Carica papaya)
MADS box

TF Information

Pfam ID Interpro ID Gene ID CIS-BP ID Sequence source
PF00319 (SRF-TF) IPR002100 evm.TU.supercontig_117.19 T258157_2.00 JGI:Phytozome (2018-Apr-12)

Directly determined binding motifs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
No direct experiments

Motifs from related TFs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
AGL80
M06994_2.00 		Arabidopsis thaliana
TCACCA
TGGTGA		 Dap-seq
OMalley et al.(2016)
FEM111_col_a 		0.778 0.778
For this family, TFs with SR scores > 0.700 will likely have a similar motif

DNA Binding Domains

Protein ID Domain From To Sequence
evm.model.supercontig_117.19 MADS box 10 55

Links

Other MADS box family TFs
Other Carica papaya TFs

79 Related TFs

Name Species Gene ID Motif Evidence SR
Score		 Action
Lus10014578.g Linum usitatissimum Lus10014578.g I 0.800
evm.TU.supercontig_117.18 Carica papaya evm.TU.supercontig_117.18 I 0.787
Eucgr.E01737 Eucalyptus grandis Eucgr.E01737 I 0.783
GLYMA18G04760 Glycine max GLYMA18G04760 I 0.778
PRUPE_ppa018168mg Prunus persica PRUPE_ppa018168mg I 0.778
Pm004396 Prunus mume Pm004396 I 0.778
Cucsa.050930 Cucumis sativus Cucsa.050930 I 0.778
MDP0000925348 Malus domestica MDP0000925348 I 0.778
LjSGA_147985.1 Lotus japonicus LjSGA_147985.1 I 0.778
mgf026186m Mimulus guttatus mgf026186m I 0.773
evm.TU.contig_27586 Carica papaya evm.TU.contig_27586 I 0.773
evm.TU.contig_43368 Carica papaya evm.TU.contig_43368 I 0.773
Bra018490 Brassica rapa Bra018490 I 0.771
30199.m000879 Ricinus communis 30199.m000879 I 0.766
Eucgr.E01733 Eucalyptus grandis Eucgr.E01733 I 0.761
Al_scaffold_0003_569 Arabidopsis lyrata Al_scaffold_0003_569 I 0.756
GLYMA11G33460 Glycine max GLYMA11G33460 I 0.756
MTR_3g065100 Medicago truncatula MTR_3g065100 I 0.756
Solyc01g102260.2 Solanum lycopersicum Solyc01g102260.2 I 0.756
TCM_026842 Theobroma cacao TCM_026842 I 0.756
Ca_13275 Cicer arietinum Ca_13275 I 0.756
Cla005226 Citrullus lanatus Cla005226 I 0.756
Bostr.2392s0039 Boechera stricta Bostr.2392s0039 I 0.756
Eucgr.E01736 Eucalyptus grandis Eucgr.E01736 I 0.756
evm.TU.contig_28448.4 Carica papaya evm.TU.contig_28448.4 I 0.756
Bo2g104810 Brassica oleracea Bo2g104810 I 0.750
VIT_14s0060g00300 Vitis vinifera VIT_14s0060g00300 I 0.750
cassava19828.m1 Manihot esculenta cassava19828.m1 I 0.750
Bostr.2570s0082 Boechera stricta Bostr.2570s0082 I 0.750
Gorai.013G210200 Gossypium raimondii Gorai.013G210200 I 0.750
MDP0000846004 Malus domestica MDP0000846004 I 0.750
SapurV1A.0442s0180 Salix purpurea SapurV1A.0442s0180 I 0.750
SapurV1A.0442s0190 Salix purpurea SapurV1A.0442s0190 I 0.750
SapurV1A.0066s0310 Salix purpurea SapurV1A.0066s0310 I 0.745
Eucgr.E01734 Eucalyptus grandis Eucgr.E01734 I 0.739
evm.TU.contig_37084 Carica papaya evm.TU.contig_37084 I 0.739
evm.TU.supercontig_1750.2 Carica papaya evm.TU.supercontig_1750.2 I 0.739
evm.TU.supercontig_265.1 Carica papaya evm.TU.supercontig_265.1 I 0.739
POPTR_0005s00420 Populus trichocarpa POPTR_0005s00420 I 0.733
Aquca_007_00647 Aquilegia coerulea Aquca_007_00647 I 0.733
Aquca_027_00068 Aquilegia coerulea Aquca_027_00068 I 0.733
Eucgr.B01824 Eucalyptus grandis Eucgr.B01824 I 0.733
evm.TU.contig_40499.2 Carica papaya evm.TU.contig_40499.2 I 0.733
evm.TU.supercontig_1237.1 Carica papaya evm.TU.supercontig_1237.1 I 0.733
Thhalv10022373m.g Eutrema salsugineum Thhalv10022373m.g I 0.733
chr6.LjT19B22.120.nd Lotus japonicus chr6.LjT19B22.120.nd I 0.733
AGL80 Arabidopsis thaliana AT5G48670 D 0.729
Bo9g078450 Brassica oleracea Bo9g078450 I 0.729
Bra029469 Brassica rapa Bra029469 I 0.729
POPTR_0013s00350 Populus trichocarpa POPTR_0013s00350 I 0.729
gene18029-v1.0-hybrid Fragaria vesca gene18029-v1.0-hybrid I 0.729
Lus10032108.g Linum usitatissimum Lus10032108.g I 0.729
Thhalv10023873m.g Eutrema salsugineum Thhalv10023873m.g I 0.729
Thhalv10024119m.g Eutrema salsugineum Thhalv10024119m.g I 0.729
Ca_06495 Cicer arietinum Ca_06495 I 0.727
evm.TU.contig_31147 Carica papaya evm.TU.contig_31147 I 0.727
evm.TU.contig_35265 Carica papaya evm.TU.contig_35265 I 0.727
evm.TU.contig_38146 Carica papaya evm.TU.contig_38146 I 0.727
PDK_20s1688321g001 Phoenix dactylifera PDK_20s1688321g001 N 0.727
LjSGA_104570.1 Lotus japonicus LjSGA_104570.1 I 0.724
evm.TU.contig_25049.5 Carica papaya evm.TU.contig_25049.5 I 0.723
Gorai.004G292000 Gossypium raimondii Gorai.004G292000 I 0.723
evm.TU.contig_36181 Carica papaya evm.TU.contig_36181 I 0.721
LjSGA_018236.1 Lotus japonicus LjSGA_018236.1 I 0.721
GSMUA_Achr3G05500_001 Musa acuminata GSMUA_Achr3G05500_001 I 0.711
cassava15247.m1 Manihot esculenta cassava15247.m1 I 0.711
evm.TU.contig_24608 Carica papaya evm.TU.contig_24608 I 0.711
evm.TU.contig_25049.2 Carica papaya evm.TU.contig_25049.2 N 0.711
evm.TU.contig_25982.2 Carica papaya evm.TU.contig_25982.2 I 0.711
evm.TU.contig_26058.1 Carica papaya evm.TU.contig_26058.1 I 0.711
evm.TU.contig_26058.2 Carica papaya evm.TU.contig_26058.2 I 0.711
evm.TU.contig_44957 Carica papaya evm.TU.contig_44957 I 0.711
evm.TU.supercontig_185.2 Carica papaya evm.TU.supercontig_185.2 I 0.711
evm.TU.supercontig_185.9 Carica papaya evm.TU.supercontig_185.9 I 0.711
LjT40B16.70.nc Lotus japonicus LjT40B16.70.nc I 0.711
POPTR_0013s01880 Populus trichocarpa POPTR_0013s01880 I 0.708
Thhalv10012000m.g Eutrema salsugineum Thhalv10012000m.g I 0.708
Ca_08934 Cicer arietinum Ca_08934 I 0.705
Gorai.003G105500 Gossypium raimondii Gorai.003G105500 N 0.702