Bostr.2570s0082 (Boechera stricta)
MADS box

TF Information

Pfam ID Interpro ID Gene ID CIS-BP ID Sequence source
PF00319 (SRF-TF) IPR002100 Bostr.2570s0082 T257608_2.00 JGI:Phytozome (2018-Apr-12)

Directly determined binding motifs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
No direct experiments

Motifs from related TFs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
AGL80
M06994_2.00 		Arabidopsis thaliana
TCACCA
TGGTGA		 Dap-seq
OMalley et al.(2016)
FEM111_col_a 		0.938 0.938
For this family, TFs with SR scores > 0.700 will likely have a similar motif

DNA Binding Domains

Protein ID Domain From To Sequence
Bostr.2570s0082.1.p MADS box 10 58

Links

Other MADS box family TFs
Other Boechera stricta TFs

110 Related TFs

Name Species Gene ID Motif Evidence SR
Score		 Action
AGL80 Arabidopsis thaliana AT5G48670 D 0.938
Bra018490 Brassica rapa Bra018490 I 0.938
Cagra.1772s0003 Capsella grandiflora Cagra.1772s0003 I 0.938
Carubv10014232m.g Capsella rubella Carubv10014232m.g I 0.938
Thhalv10023873m.g Eutrema salsugineum Thhalv10023873m.g I 0.938
Thhalv10024119m.g Eutrema salsugineum Thhalv10024119m.g I 0.938
Bo2g104810 Brassica oleracea Bo2g104810 I 0.917
Bo9g078450 Brassica oleracea Bo9g078450 I 0.917
Bra029469 Brassica rapa Bra029469 I 0.917
Thhalv10022373m.g Eutrema salsugineum Thhalv10022373m.g I 0.896
POPTR_0013s00350 Populus trichocarpa POPTR_0013s00350 I 0.875
VIT_14s0060g00300 Vitis vinifera VIT_14s0060g00300 I 0.875
cassava19828.m1 Manihot esculenta cassava19828.m1 I 0.875
Ciclev10006519m.g Citrus clementina Ciclev10006519m.g I 0.875
Ciclev10013728m.g Citrus clementina Ciclev10013728m.g I 0.875
POPTR_0005s00420 Populus trichocarpa POPTR_0005s00420 I 0.854
POPTR_0013s01880 Populus trichocarpa POPTR_0013s01880 I 0.854
TCM_026842 Theobroma cacao TCM_026842 I 0.854
gene18029-v1.0-hybrid Fragaria vesca gene18029-v1.0-hybrid I 0.854
gene22967-v1.0-hybrid Fragaria vesca gene22967-v1.0-hybrid I 0.854
MDP0000846004 Malus domestica MDP0000846004 I 0.854
Thhalv10024162m.g Eutrema salsugineum Thhalv10024162m.g I 0.854
PRUPE_ppa018168mg Prunus persica PRUPE_ppa018168mg I 0.844
Pm004396 Prunus mume Pm004396 I 0.844
30128.m008984 Ricinus communis 30128.m008984 I 0.833
30199.m000879 Ricinus communis 30199.m000879 I 0.833
SapurV1A.0066s0310 Salix purpurea SapurV1A.0066s0310 I 0.833
Cla005226 Citrullus lanatus Cla005226 I 0.822
Al_scaffold_0003_569 Arabidopsis lyrata Al_scaffold_0003_569 I 0.812
Bostr.2392s0039 Boechera stricta Bostr.2392s0039 I 0.812
gene22916-v1.0-hybrid Fragaria vesca gene22916-v1.0-hybrid I 0.812
gene23924-v1.0-hybrid Fragaria vesca gene23924-v1.0-hybrid I 0.812
MDP0000925348 Malus domestica MDP0000925348 I 0.812
Thhalv10019481m.g Eutrema salsugineum Thhalv10019481m.g I 0.812
Ciclev10024463m.g Citrus clementina Ciclev10024463m.g I 0.804
Eucgr.E01737 Eucalyptus grandis Eucgr.E01737 I 0.804
orange1.1g040642m.g Citrus sinensis orange1.1g040642m.g I 0.804
GLYMA11G33460 Glycine max GLYMA11G33460 I 0.800
MTR_3g065100 Medicago truncatula MTR_3g065100 I 0.792
PRUPE_ppa019749mg Prunus persica PRUPE_ppa019749mg I 0.792
Ca_13275 Cicer arietinum Ca_13275 I 0.792
Pm003257 Prunus mume Pm003257 I 0.792
Lus10014578.g Linum usitatissimum Lus10014578.g I 0.792
SapurV1A.0442s0180 Salix purpurea SapurV1A.0442s0180 I 0.792
SapurV1A.0442s0190 Salix purpurea SapurV1A.0442s0190 I 0.792
Thhalv10012000m.g Eutrema salsugineum Thhalv10012000m.g I 0.792
AT3G05860 Arabidopsis thaliana AT3G05860 I 0.771
GLYMA18G04760 Glycine max GLYMA18G04760 I 0.771
Cucsa.050930 Cucumis sativus Cucsa.050930 I 0.771
Bostr.2570s0083 Boechera stricta Bostr.2570s0083 I 0.771
evm.TU.contig_25049.5 Carica papaya evm.TU.contig_25049.5 I 0.771
evm.TU.contig_28448.4 Carica papaya evm.TU.contig_28448.4 I 0.771
Lus10032108.g Linum usitatissimum Lus10032108.g I 0.771
chr6.LjT19B22.120.nd Lotus japonicus chr6.LjT19B22.120.nd I 0.771
Eucgr.E01734 Eucalyptus grandis Eucgr.E01734 I 0.761
evm.TU.contig_40008 Carica papaya evm.TU.contig_40008 I 0.759
Bra041022 Brassica rapa Bra041022 I 0.756
cassava15247.m1 Manihot esculenta cassava15247.m1 I 0.756
evm.TU.contig_25982.2 Carica papaya evm.TU.contig_25982.2 I 0.756
evm.TU.supercontig_185.9 Carica papaya evm.TU.supercontig_185.9 I 0.756
Solyc01g102260.2 Solanum lycopersicum Solyc01g102260.2 I 0.750
TCM_025670 Theobroma cacao TCM_025670 I 0.750
evm.TU.supercontig_117.19 Carica papaya evm.TU.supercontig_117.19 I 0.750
evm.TU.supercontig_139.40 Carica papaya evm.TU.supercontig_139.40 I 0.750
evm.TU.supercontig_1750.2 Carica papaya evm.TU.supercontig_1750.2 I 0.750
evm.TU.supercontig_265.1 Carica papaya evm.TU.supercontig_265.1 I 0.750
evm.TU.supercontig_30.166 Carica papaya evm.TU.supercontig_30.166 I 0.750
Gorai.004G292000 Gossypium raimondii Gorai.004G292000 I 0.750
evm.TU.contig_32899.1 Carica papaya evm.TU.contig_32899.1 I 0.735
evm.TU.contig_33457.2 Carica papaya evm.TU.contig_33457.2 I 0.733
evm.TU.supercontig_185.11 Carica papaya evm.TU.supercontig_185.11 I 0.733
LjSGA_126766.1 Lotus japonicus LjSGA_126766.1 I 0.733
TCM_025671 Theobroma cacao TCM_025671 I 0.729
TCM_026845 Theobroma cacao TCM_026845 I 0.729
TCM_042799 Theobroma cacao TCM_042799 I 0.729
Ca_06495 Cicer arietinum Ca_06495 I 0.729
mgf026186m Mimulus guttatus mgf026186m I 0.729
Eucgr.B01824 Eucalyptus grandis Eucgr.B01824 I 0.729
Eucgr.E01733 Eucalyptus grandis Eucgr.E01733 I 0.729
Eucgr.E01736 Eucalyptus grandis Eucgr.E01736 I 0.729
evm.TU.contig_26058.1 Carica papaya evm.TU.contig_26058.1 I 0.729
evm.TU.contig_36543 Carica papaya evm.TU.contig_36543 I 0.729
evm.TU.contig_40499.2 Carica papaya evm.TU.contig_40499.2 I 0.729
evm.TU.supercontig_117.18 Carica papaya evm.TU.supercontig_117.18 I 0.729
evm.TU.supercontig_118.30 Carica papaya evm.TU.supercontig_118.30 I 0.729
evm.TU.supercontig_1237.1 Carica papaya evm.TU.supercontig_1237.1 I 0.729
gene04949-v1.0-hybrid Fragaria vesca gene04949-v1.0-hybrid I 0.729
Lus10022316.g Linum usitatissimum Lus10022316.g I 0.729
Thhalv10002346m.g Eutrema salsugineum Thhalv10002346m.g I 0.729
Thhalv10019451m.g Eutrema salsugineum Thhalv10019451m.g I 0.729
Thhalv10019579m.g Eutrema salsugineum Thhalv10019579m.g I 0.729
Thhalv10019751m.g Eutrema salsugineum Thhalv10019751m.g I 0.729
LjT40B16.70.nc Lotus japonicus LjT40B16.70.nc I 0.729
Thhalv10019516m.g Eutrema salsugineum Thhalv10019516m.g I 0.723
Gorai.013G210400 Gossypium raimondii Gorai.013G210400 I 0.711
Bo5g145000 Brassica oleracea Bo5g145000 I 0.708
MTR_1g084950 Medicago truncatula MTR_1g084950 N 0.708
MTR_4g028720 Medicago truncatula MTR_4g028720 N 0.708
Cla009163 Citrullus lanatus Cla009163 I 0.708
evm.TU.contig_25049.1 Carica papaya evm.TU.contig_25049.1 I 0.708
evm.TU.contig_39415 Carica papaya evm.TU.contig_39415 I 0.708
evm.TU.contig_40189 Carica papaya evm.TU.contig_40189 I 0.708
evm.TU.contig_44957 Carica papaya evm.TU.contig_44957 I 0.708
gene15899-v1.0-hybrid Fragaria vesca gene15899-v1.0-hybrid N 0.708
Lus10014883.g Linum usitatissimum Lus10014883.g I 0.708
Thhalv10002350m.g Eutrema salsugineum Thhalv10002350m.g I 0.708
Thhalv10019449m.g Eutrema salsugineum Thhalv10019449m.g I 0.708
Thhalv10027038m.g Eutrema salsugineum Thhalv10027038m.g I 0.708
GLYMA18G06040 Glycine max GLYMA18G06040 N 0.705
Thhalv10002352m.g Eutrema salsugineum Thhalv10002352m.g I 0.705