Cla009163 (Citrullus lanatus)
MADS box

TF Information

Pfam ID Interpro ID Gene ID CIS-BP ID Sequence source
PF00319 (SRF-TF) IPR002100 Cla009163 T256955_2.00 GigaDB (2015-Oct-22)

Directly determined binding motifs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
No direct experiments

Motifs from related TFs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
AGL80
M06994_2.00 		Arabidopsis thaliana
TCACCA
TGGTGA		 Dap-seq
OMalley et al.(2016)
FEM111_col_a 		0.733 0.733
For this family, TFs with SR scores > 0.700 will likely have a similar motif

DNA Binding Domains

Protein ID Domain From To Sequence
Cla009163 MADS box 10 55

Links

Other MADS box family TFs
Other Citrullus lanatus TFs

70 Related TFs

Name Species Gene ID Motif Evidence SR
Score		 Action
evm.TU.contig_43368 Carica papaya evm.TU.contig_43368 I 0.864
TCM_026842 Theobroma cacao TCM_026842 I 0.844
Cucsa.224270 Cucumis sativus Cucsa.224270 I 0.844
evm.TU.contig_27586 Carica papaya evm.TU.contig_27586 I 0.818
cassava38612.m1 Manihot esculenta cassava38612.m1 N 0.805
Cla005226 Citrullus lanatus Cla005226 I 0.800
Cucsa.050930 Cucumis sativus Cucsa.050930 I 0.800
Ciclev10006519m.g Citrus clementina Ciclev10006519m.g I 0.792
Ciclev10013728m.g Citrus clementina Ciclev10013728m.g I 0.792
SapurV1A.0066s0310 Salix purpurea SapurV1A.0066s0310 I 0.787
Ciclev10024463m.g Citrus clementina Ciclev10024463m.g I 0.783
orange1.1g040642m.g Citrus sinensis orange1.1g040642m.g I 0.783
Gorai.013G210700 Gossypium raimondii Gorai.013G210700 N 0.778
chr6.LjT19B22.120.nd Lotus japonicus chr6.LjT19B22.120.nd I 0.778
evm.TU.contig_35265 Carica papaya evm.TU.contig_35265 I 0.773
evm.TU.contig_38146 Carica papaya evm.TU.contig_38146 I 0.773
evm.TU.contig_40485 Carica papaya evm.TU.contig_40485 I 0.773
POPTR_0013s01880 Populus trichocarpa POPTR_0013s01880 I 0.771
gene22967-v1.0-hybrid Fragaria vesca gene22967-v1.0-hybrid I 0.771
LjSGA_104570.1 Lotus japonicus LjSGA_104570.1 I 0.759
MTR_3g065100 Medicago truncatula MTR_3g065100 I 0.756
PRUPE_ppa018168mg Prunus persica PRUPE_ppa018168mg I 0.756
Ca_13275 Cicer arietinum Ca_13275 I 0.756
Pm004396 Prunus mume Pm004396 I 0.756
MDP0000925348 Malus domestica MDP0000925348 I 0.756
VIT_14s0060g00300 Vitis vinifera VIT_14s0060g00300 I 0.750
Ca_06495 Cicer arietinum Ca_06495 I 0.750
30128.m008984 Ricinus communis 30128.m008984 I 0.750
cassava19828.m1 Manihot esculenta cassava19828.m1 I 0.750
mgf026186m Mimulus guttatus mgf026186m I 0.750
gene22916-v1.0-hybrid Fragaria vesca gene22916-v1.0-hybrid I 0.750
Eucgr.E01737 Eucalyptus grandis Eucgr.E01737 I 0.739
evm.TU.contig_37084 Carica papaya evm.TU.contig_37084 I 0.739
GLYMA18G04760 Glycine max GLYMA18G04760 I 0.733
Solyc01g102260.2 Solanum lycopersicum Solyc01g102260.2 I 0.733
evm.TU.contig_28448.4 Carica papaya evm.TU.contig_28448.4 I 0.733
Gorai.013G210400 Gossypium raimondii Gorai.013G210400 I 0.733
POPTR_0013s00350 Populus trichocarpa POPTR_0013s00350 I 0.729
Thhalv10023873m.g Eutrema salsugineum Thhalv10023873m.g I 0.729
Thhalv10024119m.g Eutrema salsugineum Thhalv10024119m.g I 0.729
Ca_08934 Cicer arietinum Ca_08934 I 0.727
evm.TU.supercontig_1750.1 Carica papaya evm.TU.supercontig_1750.1 I 0.727
TCM_025671 Theobroma cacao TCM_025671 I 0.723
30199.m000879 Ricinus communis 30199.m000879 I 0.723
LjSGA_018236.1 Lotus japonicus LjSGA_018236.1 I 0.721
evm.TU.supercontig_1750.2 Carica papaya evm.TU.supercontig_1750.2 I 0.717
evm.TU.supercontig_265.1 Carica papaya evm.TU.supercontig_265.1 I 0.717
GLYMA11G33460 Glycine max GLYMA11G33460 I 0.711
MTR_3g466980 Medicago truncatula MTR_3g466980 N 0.711
TCM_026845 Theobroma cacao TCM_026845 I 0.711
evm.TU.contig_25049.1 Carica papaya evm.TU.contig_25049.1 I 0.711
evm.TU.contig_26058.1 Carica papaya evm.TU.contig_26058.1 I 0.711
evm.TU.contig_33457.2 Carica papaya evm.TU.contig_33457.2 I 0.711
evm.TU.contig_40499.2 Carica papaya evm.TU.contig_40499.2 I 0.711
evm.TU.supercontig_1237.1 Carica papaya evm.TU.supercontig_1237.1 I 0.711
evm.TU.supercontig_185.11 Carica papaya evm.TU.supercontig_185.11 I 0.711
evm.TU.supercontig_185.2 Carica papaya evm.TU.supercontig_185.2 I 0.711
Lus10014578.g Linum usitatissimum Lus10014578.g I 0.711
Thhalv10022373m.g Eutrema salsugineum Thhalv10022373m.g I 0.711
LjT40B16.70.nc Lotus japonicus LjT40B16.70.nc I 0.711
POPTR_0005s00420 Populus trichocarpa POPTR_0005s00420 I 0.708
TCM_042799 Theobroma cacao TCM_042799 I 0.708
Bostr.2570s0082 Boechera stricta Bostr.2570s0082 I 0.708
gene18029-v1.0-hybrid Fragaria vesca gene18029-v1.0-hybrid I 0.708
gene23924-v1.0-hybrid Fragaria vesca gene23924-v1.0-hybrid I 0.708
Gorai.013G210200 Gossypium raimondii Gorai.013G210200 I 0.708
LjSGA_102554.1 Lotus japonicus LjSGA_102554.1 I 0.707
GLYMA11G30640 Glycine max GLYMA11G30640 N 0.705
Gorai.004G292000 Gossypium raimondii Gorai.004G292000 I 0.702
evm.TU.supercontig_22.66 Carica papaya evm.TU.supercontig_22.66 N 0.700