30128.m008984 (Ricinus communis)
MADS box

TF Information

Pfam ID Interpro ID Gene ID CIS-BP ID Sequence source
PF00319 (SRF-TF) IPR002100 30128.m008984 T257159_2.00 JGI (2012-Mar-17)

Directly determined binding motifs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
No direct experiments

Motifs from related TFs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
AGL80
M06994_2.00 		Arabidopsis thaliana
TCACCA
TGGTGA		 Dap-seq
OMalley et al.(2016)
FEM111_col_a 		0.854 0.854
For this family, TFs with SR scores > 0.700 will likely have a similar motif

DNA Binding Domains

Protein ID Domain From To Sequence
30128.m008984 MADS box 10 58

Links

Other MADS box family TFs
Other Ricinus communis TFs

94 Related TFs

Name Species Gene ID Motif Evidence SR
Score		 Action
POPTR_0013s01880 Populus trichocarpa POPTR_0013s01880 I 0.917
TCM_026842 Theobroma cacao TCM_026842 I 0.896
VIT_14s0060g00300 Vitis vinifera VIT_14s0060g00300 I 0.875
cassava19828.m1 Manihot esculenta cassava19828.m1 I 0.875
SapurV1A.0066s0310 Salix purpurea SapurV1A.0066s0310 I 0.875
AGL80 Arabidopsis thaliana AT5G48670 D 0.854
Bo9g078450 Brassica oleracea Bo9g078450 I 0.854
Bra029469 Brassica rapa Bra029469 I 0.854
POPTR_0013s00350 Populus trichocarpa POPTR_0013s00350 I 0.854
TCM_025670 Theobroma cacao TCM_025670 I 0.854
Ciclev10006519m.g Citrus clementina Ciclev10006519m.g I 0.854
Ciclev10013728m.g Citrus clementina Ciclev10013728m.g I 0.854
gene22967-v1.0-hybrid Fragaria vesca gene22967-v1.0-hybrid I 0.854
POPTR_0005s00420 Populus trichocarpa POPTR_0005s00420 I 0.833
TCM_025671 Theobroma cacao TCM_025671 I 0.833
Bostr.2570s0082 Boechera stricta Bostr.2570s0082 I 0.833
gene18029-v1.0-hybrid Fragaria vesca gene18029-v1.0-hybrid I 0.833
Thhalv10023873m.g Eutrema salsugineum Thhalv10023873m.g I 0.833
Thhalv10024119m.g Eutrema salsugineum Thhalv10024119m.g I 0.833
PRUPE_ppa018168mg Prunus persica PRUPE_ppa018168mg I 0.812
TCM_026845 Theobroma cacao TCM_026845 I 0.812
TCM_042799 Theobroma cacao TCM_042799 I 0.812
Pm004396 Prunus mume Pm004396 I 0.812
30199.m000879 Ricinus communis 30199.m000879 I 0.812
gene22916-v1.0-hybrid Fragaria vesca gene22916-v1.0-hybrid I 0.812
gene23924-v1.0-hybrid Fragaria vesca gene23924-v1.0-hybrid I 0.812
Lus10014578.g Linum usitatissimum Lus10014578.g I 0.812
MDP0000846004 Malus domestica MDP0000846004 I 0.812
Thhalv10022373m.g Eutrema salsugineum Thhalv10022373m.g I 0.812
chr6.LjT19B22.120.nd Lotus japonicus chr6.LjT19B22.120.nd I 0.812
Bra018490 Brassica rapa Bra018490 I 0.792
MTR_3g065100 Medicago truncatula MTR_3g065100 I 0.792
PRUPE_ppa019749mg Prunus persica PRUPE_ppa019749mg I 0.792
TCM_025676 Theobroma cacao TCM_025676 N 0.792
TCM_042848 Theobroma cacao TCM_042848 N 0.792
Ca_13275 Cicer arietinum Ca_13275 I 0.792
Pm003257 Prunus mume Pm003257 I 0.792
Cagra.1772s0003 Capsella grandiflora Cagra.1772s0003 I 0.792
Carubv10014232m.g Capsella rubella Carubv10014232m.g I 0.792
evm.TU.contig_28448.4 Carica papaya evm.TU.contig_28448.4 I 0.792
evm.TU.supercontig_117.18 Carica papaya evm.TU.supercontig_117.18 I 0.792
Lus10032108.g Linum usitatissimum Lus10032108.g I 0.792
Bo2g104810 Brassica oleracea Bo2g104810 I 0.771
GLYMA18G04760 Glycine max GLYMA18G04760 I 0.771
Ca_06495 Cicer arietinum Ca_06495 I 0.771
Cla005226 Citrullus lanatus Cla005226 I 0.771
Cucsa.050930 Cucumis sativus Cucsa.050930 I 0.771
mgf026186m Mimulus guttatus mgf026186m I 0.771
Ciclev10024463m.g Citrus clementina Ciclev10024463m.g I 0.771
Eucgr.E01737 Eucalyptus grandis Eucgr.E01737 I 0.771
evm.TU.contig_25049.5 Carica papaya evm.TU.contig_25049.5 I 0.771
evm.TU.supercontig_139.40 Carica papaya evm.TU.supercontig_139.40 I 0.771
evm.TU.supercontig_1750.2 Carica papaya evm.TU.supercontig_1750.2 I 0.771
evm.TU.supercontig_265.1 Carica papaya evm.TU.supercontig_265.1 I 0.771
evm.TU.supercontig_30.166 Carica papaya evm.TU.supercontig_30.166 I 0.771
MDP0000925348 Malus domestica MDP0000925348 I 0.771
orange1.1g040642m.g Citrus sinensis orange1.1g040642m.g I 0.771
SapurV1A.0442s0180 Salix purpurea SapurV1A.0442s0180 I 0.771
SapurV1A.0442s0190 Salix purpurea SapurV1A.0442s0190 I 0.771
LjSGA_107301.1 Lotus japonicus LjSGA_107301.1 I 0.771
LjSGA_126766.1 Lotus japonicus LjSGA_126766.1 I 0.771
AT3G05860 Arabidopsis thaliana AT3G05860 I 0.750
GLYMA11G33460 Glycine max GLYMA11G33460 I 0.750
Solyc01g102260.2 Solanum lycopersicum Solyc01g102260.2 I 0.750
Ca_08369 Cicer arietinum Ca_08369 N 0.750
Cla009163 Citrullus lanatus Cla009163 I 0.750
Eucgr.E01733 Eucalyptus grandis Eucgr.E01733 I 0.750
evm.TU.contig_40499.2 Carica papaya evm.TU.contig_40499.2 I 0.750
evm.TU.supercontig_1237.1 Carica papaya evm.TU.supercontig_1237.1 I 0.750
Gorai.004G292000 Gossypium raimondii Gorai.004G292000 I 0.750
Thhalv10024162m.g Eutrema salsugineum Thhalv10024162m.g I 0.750
LjSGA_018236.1 Lotus japonicus LjSGA_018236.1 I 0.750
LjSGA_042497.2 Lotus japonicus LjSGA_042497.2 I 0.750
LjT40B16.70.nc Lotus japonicus LjT40B16.70.nc I 0.750
Bostr.2570s0083 Boechera stricta Bostr.2570s0083 I 0.729
Eucgr.E01736 Eucalyptus grandis Eucgr.E01736 I 0.729
evm.TU.contig_26058.1 Carica papaya evm.TU.contig_26058.1 I 0.729
evm.TU.supercontig_118.30 Carica papaya evm.TU.supercontig_118.30 I 0.729
gene04949-v1.0-hybrid Fragaria vesca gene04949-v1.0-hybrid I 0.729
Thhalv10012000m.g Eutrema salsugineum Thhalv10012000m.g I 0.729
Thhalv10019481m.g Eutrema salsugineum Thhalv10019481m.g I 0.729
LjSGA_024860.1 Lotus japonicus LjSGA_024860.1 I 0.729
Al_scaffold_0003_569 Arabidopsis lyrata Al_scaffold_0003_569 I 0.708
GLYMA10G28320 Glycine max GLYMA10G28320 N 0.708
Bostr.2392s0039 Boechera stricta Bostr.2392s0039 I 0.708
Eucgr.E01734 Eucalyptus grandis Eucgr.E01734 I 0.708
evm.TU.contig_25049.1 Carica papaya evm.TU.contig_25049.1 I 0.708
evm.TU.contig_25982.2 Carica papaya evm.TU.contig_25982.2 I 0.708
evm.TU.contig_26058.2 Carica papaya evm.TU.contig_26058.2 I 0.708
evm.TU.contig_36543 Carica papaya evm.TU.contig_36543 I 0.708
evm.TU.contig_44957 Carica papaya evm.TU.contig_44957 I 0.708
evm.TU.supercontig_135.5 Carica papaya evm.TU.supercontig_135.5 N 0.708
evm.TU.supercontig_185.9 Carica papaya evm.TU.supercontig_185.9 I 0.708
Lus10022316.g Linum usitatissimum Lus10022316.g I 0.708