LjSGA_024860.1 (Lotus japonicus)
MADS box

TF Information

Pfam ID Interpro ID Gene ID CIS-BP ID Sequence source
PF00319 (SRF-TF) IPR002100 LjSGA_024860.1 T259373_2.00 Superfamily (2010-Oct-26)

Directly determined binding motifs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
No direct experiments

Motifs from related TFs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
AGL80
M06994_2.00 		Arabidopsis thaliana
TCACCA
TGGTGA		 Dap-seq
OMalley et al.(2016)
FEM111_col_a 		0.708 0.708
For this family, TFs with SR scores > 0.700 will likely have a similar motif

DNA Binding Domains

Protein ID Domain From To Sequence
LjSGA_024860.1 MADS box 10 58

Links

Other MADS box family TFs
Other Lotus japonicus TFs

17 Related TFs

Name Species Gene ID Motif Evidence SR
Score		 Action
MTR_1g084950 Medicago truncatula MTR_1g084950 N 0.833
GLYMA10G28320 Glycine max GLYMA10G28320 N 0.792
MTR_5g047580 Medicago truncatula MTR_5g047580 N 0.771
Ca_08369 Cicer arietinum Ca_08369 N 0.771
MTR_4g028720 Medicago truncatula MTR_4g028720 N 0.750
Ca_03592 Cicer arietinum Ca_03592 N 0.750
LjT04G17.30.nc Lotus japonicus LjT04G17.30.nc N 0.750
MTR_1g077300 Medicago truncatula MTR_1g077300 N 0.729
MTR_1g077320 Medicago truncatula MTR_1g077320 N 0.729
POPTR_0013s01880 Populus trichocarpa POPTR_0013s01880 I 0.729
30128.m008984 Ricinus communis 30128.m008984 I 0.729
Ciclev10006519m.g Citrus clementina Ciclev10006519m.g I 0.729
Ciclev10013728m.g Citrus clementina Ciclev10013728m.g I 0.729
AGL80 Arabidopsis thaliana AT5G48670 D 0.708
MTR_7g011950 Medicago truncatula MTR_7g011950 N 0.708
30199.m000879 Ricinus communis 30199.m000879 I 0.708
gene22967-v1.0-hybrid Fragaria vesca gene22967-v1.0-hybrid I 0.708