TCM_025671 (Theobroma cacao)
MADS box

TF Information

Pfam ID Interpro ID Gene ID CIS-BP ID Sequence source Animal TF db
PF00319 (SRF-TF) IPR002100 TCM_025671 T256464_2.00 Ensembl (2018-Dec-8) Link out

Directly determined binding motifs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
No direct experiments

Motifs from related TFs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
AGL80
M06994_2.00 		Arabidopsis thaliana
TCACCA
TGGTGA		 Dap-seq
OMalley et al.(2016)
FEM111_col_a 		0.745 0.745
For this family, TFs with SR scores > 0.700 will likely have a similar motif

DNA Binding Domains

Protein ID Domain From To Sequence
EOY10300 MADS box 10 57

Links

Other MADS box family TFs
Other Theobroma cacao TFs

75 Related TFs

Name Species Gene ID Motif Evidence SR
Score		 Action
TCM_025670 Theobroma cacao TCM_025670 I 0.896
TCM_026842 Theobroma cacao TCM_026842 I 0.872
TCM_026845 Theobroma cacao TCM_026845 I 0.872
TCM_042799 Theobroma cacao TCM_042799 I 0.872
SapurV1A.0066s0310 Salix purpurea SapurV1A.0066s0310 I 0.851
TCM_025676 Theobroma cacao TCM_025676 N 0.833
30128.m008984 Ricinus communis 30128.m008984 I 0.833
POPTR_0013s01880 Populus trichocarpa POPTR_0013s01880 I 0.830
TCM_042848 Theobroma cacao TCM_042848 N 0.830
VIT_14s0060g00300 Vitis vinifera VIT_14s0060g00300 I 0.809
cassava19828.m1 Manihot esculenta cassava19828.m1 I 0.792
Ciclev10006519m.g Citrus clementina Ciclev10006519m.g I 0.792
Ciclev10013728m.g Citrus clementina Ciclev10013728m.g I 0.792
30199.m000879 Ricinus communis 30199.m000879 I 0.787
MTR_3g065100 Medicago truncatula MTR_3g065100 I 0.778
PRUPE_ppa018168mg Prunus persica PRUPE_ppa018168mg I 0.778
Ca_13275 Cicer arietinum Ca_13275 I 0.778
Pm004396 Prunus mume Pm004396 I 0.778
evm.TU.contig_27586 Carica papaya evm.TU.contig_27586 I 0.773
evm.TU.contig_43368 Carica papaya evm.TU.contig_43368 I 0.773
POPTR_0013s00350 Populus trichocarpa POPTR_0013s00350 I 0.771
gene18029-v1.0-hybrid Fragaria vesca gene18029-v1.0-hybrid I 0.771
gene22967-v1.0-hybrid Fragaria vesca gene22967-v1.0-hybrid I 0.771
POPTR_0005s00420 Populus trichocarpa POPTR_0005s00420 I 0.766
PRUPE_ppa019749mg Prunus persica PRUPE_ppa019749mg I 0.766
Pm003257 Prunus mume Pm003257 I 0.766
Ciclev10024463m.g Citrus clementina Ciclev10024463m.g I 0.761
Eucgr.E01737 Eucalyptus grandis Eucgr.E01737 I 0.761
orange1.1g040642m.g Citrus sinensis orange1.1g040642m.g I 0.761
LjSGA_104570.1 Lotus japonicus LjSGA_104570.1 I 0.759
GLYMA18G04760 Glycine max GLYMA18G04760 I 0.756
Cla005226 Citrullus lanatus Cla005226 I 0.756
Cucsa.050930 Cucumis sativus Cucsa.050930 I 0.756
Ca_06495 Cicer arietinum Ca_06495 I 0.750
mgf026186m Mimulus guttatus mgf026186m I 0.750
Thhalv10023873m.g Eutrema salsugineum Thhalv10023873m.g I 0.750
Thhalv10024119m.g Eutrema salsugineum Thhalv10024119m.g I 0.750
evm.TU.contig_28448.4 Carica papaya evm.TU.contig_28448.4 I 0.745
gene23924-v1.0-hybrid Fragaria vesca gene23924-v1.0-hybrid I 0.745
LjSGA_147985.1 Lotus japonicus LjSGA_147985.1 I 0.741
Eucgr.E01733 Eucalyptus grandis Eucgr.E01733 I 0.739
evm.TU.supercontig_1750.2 Carica papaya evm.TU.supercontig_1750.2 I 0.739
evm.TU.supercontig_265.1 Carica papaya evm.TU.supercontig_265.1 I 0.739
GLYMA11G33460 Glycine max GLYMA11G33460 I 0.733
evm.TU.contig_40499.2 Carica papaya evm.TU.contig_40499.2 I 0.733
LjSGA_107301.1 Lotus japonicus LjSGA_107301.1 I 0.733
LjSGA_126766.1 Lotus japonicus LjSGA_126766.1 I 0.733
AGL80 Arabidopsis thaliana AT5G48670 D 0.729
Bostr.2570s0082 Boechera stricta Bostr.2570s0082 I 0.729
MDP0000846004 Malus domestica MDP0000846004 I 0.729
evm.TU.contig_38146 Carica papaya evm.TU.contig_38146 I 0.727
Bo9g078450 Brassica oleracea Bo9g078450 I 0.723
Bra029469 Brassica rapa Bra029469 I 0.723
TCM_025674 Theobroma cacao TCM_025674 N 0.723
Cla009163 Citrullus lanatus Cla009163 I 0.723
evm.TU.contig_25049.5 Carica papaya evm.TU.contig_25049.5 I 0.723
evm.TU.supercontig_117.18 Carica papaya evm.TU.supercontig_117.18 I 0.723
Lus10014578.g Linum usitatissimum Lus10014578.g I 0.723
MDP0000925348 Malus domestica MDP0000925348 I 0.723
chr6.LjT19B22.120.nd Lotus japonicus chr6.LjT19B22.120.nd I 0.723
evm.TU.contig_25049.1 Carica papaya evm.TU.contig_25049.1 I 0.711
evm.TU.contig_26058.1 Carica papaya evm.TU.contig_26058.1 I 0.711
Cagra.1772s0003 Capsella grandiflora Cagra.1772s0003 I 0.708
Carubv10014232m.g Capsella rubella Carubv10014232m.g I 0.708
gene22916-v1.0-hybrid Fragaria vesca gene22916-v1.0-hybrid I 0.708
AT3G05860 Arabidopsis thaliana AT3G05860 I 0.702
Solyc01g102260.2 Solanum lycopersicum Solyc01g102260.2 I 0.702
Eucgr.E01736 Eucalyptus grandis Eucgr.E01736 I 0.702
evm.TU.supercontig_118.30 Carica papaya evm.TU.supercontig_118.30 I 0.702
evm.TU.supercontig_1237.1 Carica papaya evm.TU.supercontig_1237.1 I 0.702
evm.TU.supercontig_30.166 Carica papaya evm.TU.supercontig_30.166 I 0.702
Gorai.004G292000 Gossypium raimondii Gorai.004G292000 I 0.702
Lus10032108.g Linum usitatissimum Lus10032108.g I 0.702
Thhalv10022373m.g Eutrema salsugineum Thhalv10022373m.g I 0.702
LjT40B16.70.nc Lotus japonicus LjT40B16.70.nc I 0.702