Ca_06495 (Cicer arietinum)
MADS box

TF Information

Pfam ID Interpro ID Gene ID CIS-BP ID Sequence source
PF00319 (SRF-TF) IPR002100 Ca_06495 T256896_2.00 GigaDB (2015-Oct-22)

Directly determined binding motifs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
No direct experiments

Motifs from related TFs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
AGL80
M06994_2.00 		Arabidopsis thaliana
TCACCA
TGGTGA		 Dap-seq
OMalley et al.(2016)
FEM111_col_a 		0.795 0.795
For this family, TFs with SR scores > 0.700 will likely have a similar motif

DNA Binding Domains

Protein ID Domain From To Sequence
Ca_06495 MADS box 10 53

Links

Other MADS box family TFs
Other Cicer arietinum TFs

130 Related TFs

Name Species Gene ID Motif Evidence SR
Score		 Action
Solyc01g102260.2 Solanum lycopersicum Solyc01g102260.2 I 0.909
Gorai.004G292000 Gossypium raimondii Gorai.004G292000 I 0.886
MTR_3g065100 Medicago truncatula MTR_3g065100 I 0.867
Ca_13275 Cicer arietinum Ca_13275 I 0.867
GLYMA18G04760 Glycine max GLYMA18G04760 I 0.864
POPTR_0005s00420 Populus trichocarpa POPTR_0005s00420 I 0.864
VIT_14s0060g00300 Vitis vinifera VIT_14s0060g00300 I 0.864
Bo9g078450 Brassica oleracea Bo9g078450 I 0.841
Bra029469 Brassica rapa Bra029469 I 0.841
POPTR_0013s00350 Populus trichocarpa POPTR_0013s00350 I 0.841
POPTR_0013s01880 Populus trichocarpa POPTR_0013s01880 I 0.841
TCM_026842 Theobroma cacao TCM_026842 I 0.841
evm.TU.supercontig_117.18 Carica papaya evm.TU.supercontig_117.18 I 0.841
gene22967-v1.0-hybrid Fragaria vesca gene22967-v1.0-hybrid I 0.841
SapurV1A.0066s0310 Salix purpurea SapurV1A.0066s0310 I 0.841
Thhalv10012000m.g Eutrema salsugineum Thhalv10012000m.g I 0.841
LjT40B16.70.nc Lotus japonicus LjT40B16.70.nc I 0.841
GLYMA11G33460 Glycine max GLYMA11G33460 I 0.822
cassava15247.m1 Manihot esculenta cassava15247.m1 I 0.822
mgf026186m Mimulus guttatus mgf026186m I 0.818
evm.TU.contig_24608 Carica papaya evm.TU.contig_24608 I 0.818
evm.TU.contig_27586 Carica papaya evm.TU.contig_27586 I 0.818
evm.TU.contig_28448.1 Carica papaya evm.TU.contig_28448.1 N 0.818
evm.TU.supercontig_358.1 Carica papaya evm.TU.supercontig_358.1 N 0.818
gene22916-v1.0-hybrid Fragaria vesca gene22916-v1.0-hybrid I 0.818
Thhalv10022373m.g Eutrema salsugineum Thhalv10022373m.g I 0.818
Al_scaffold_0003_569 Arabidopsis lyrata Al_scaffold_0003_569 I 0.795
MTR_4g031910 Medicago truncatula MTR_4g031910 N 0.795
Ca_08934 Cicer arietinum Ca_08934 I 0.795
evm.TU.contig_28089 Carica papaya evm.TU.contig_28089 I 0.795
evm.TU.contig_38760 Carica papaya evm.TU.contig_38760 N 0.795
evm.TU.supercontig_185.12 Carica papaya evm.TU.supercontig_185.12 I 0.795
evm.TU.supercontig_265.6 Carica papaya evm.TU.supercontig_265.6 N 0.795
evm.TU.supercontig_30.164 Carica papaya evm.TU.supercontig_30.164 N 0.795
gene23924-v1.0-hybrid Fragaria vesca gene23924-v1.0-hybrid I 0.795
MDP0000925348 Malus domestica MDP0000925348 I 0.795
Thhalv10023873m.g Eutrema salsugineum Thhalv10023873m.g I 0.795
Thhalv10024119m.g Eutrema salsugineum Thhalv10024119m.g I 0.795
Thhalv10024162m.g Eutrema salsugineum Thhalv10024162m.g I 0.795
chr6.LjT19B22.120.nd Lotus japonicus chr6.LjT19B22.120.nd I 0.795
cassava19828.m1 Manihot esculenta cassava19828.m1 I 0.792
Ciclev10024463m.g Citrus clementina Ciclev10024463m.g I 0.783
orange1.1g040642m.g Citrus sinensis orange1.1g040642m.g I 0.783
PRUPE_ppa018168mg Prunus persica PRUPE_ppa018168mg I 0.778
Pm004396 Prunus mume Pm004396 I 0.778
Aquca_027_00068 Aquilegia coerulea Aquca_027_00068 I 0.778
evm.TU.contig_26058.2 Carica papaya evm.TU.contig_26058.2 I 0.778
LjSGA_147985.1 Lotus japonicus LjSGA_147985.1 I 0.778
Aquca_007_00647 Aquilegia coerulea Aquca_007_00647 I 0.773
Bostr.2392s0039 Boechera stricta Bostr.2392s0039 I 0.773
evm.TU.contig_25049.2 Carica papaya evm.TU.contig_25049.2 N 0.773
evm.TU.contig_25253.1 Carica papaya evm.TU.contig_25253.1 N 0.773
evm.TU.contig_28448.4 Carica papaya evm.TU.contig_28448.4 I 0.773
evm.TU.contig_35009 Carica papaya evm.TU.contig_35009 I 0.773
evm.TU.contig_38146 Carica papaya evm.TU.contig_38146 I 0.773
evm.TU.contig_40499.2 Carica papaya evm.TU.contig_40499.2 I 0.773
evm.TU.supercontig_34.40 Carica papaya evm.TU.supercontig_34.40 N 0.773
Lus10014578.g Linum usitatissimum Lus10014578.g I 0.773
LjSGA_018236.1 Lotus japonicus LjSGA_018236.1 I 0.773
30128.m008984 Ricinus communis 30128.m008984 I 0.771
Ciclev10006519m.g Citrus clementina Ciclev10006519m.g I 0.771
Ciclev10013728m.g Citrus clementina Ciclev10013728m.g I 0.771
evm.TU.contig_36181 Carica papaya evm.TU.contig_36181 I 0.767
30199.m000879 Ricinus communis 30199.m000879 I 0.766
Eucgr.E01737 Eucalyptus grandis Eucgr.E01737 I 0.761
Cla005226 Citrullus lanatus Cla005226 I 0.756
Cucsa.050930 Cucumis sativus Cucsa.050930 I 0.756
TCM_025671 Theobroma cacao TCM_025671 I 0.750
Ca_03592 Cicer arietinum Ca_03592 N 0.750
Cla009163 Citrullus lanatus Cla009163 I 0.750
Eucgr.E01733 Eucalyptus grandis Eucgr.E01733 I 0.750
Eucgr.E01736 Eucalyptus grandis Eucgr.E01736 I 0.750
evm.TU.contig_31147 Carica papaya evm.TU.contig_31147 I 0.750
evm.TU.supercontig_1237.1 Carica papaya evm.TU.supercontig_1237.1 I 0.750
evm.TU.supercontig_1256.1 Carica papaya evm.TU.supercontig_1256.1 N 0.750
evm.TU.supercontig_22.66 Carica papaya evm.TU.supercontig_22.66 N 0.750
evm.TU.supercontig_30.166 Carica papaya evm.TU.supercontig_30.166 I 0.750
Gorai.004G229700 Gossypium raimondii Gorai.004G229700 N 0.750
Gorai.013G210200 Gossypium raimondii Gorai.013G210200 I 0.750
Lus10032108.g Linum usitatissimum Lus10032108.g I 0.750
evm.TU.contig_25253.2 Carica papaya evm.TU.contig_25253.2 N 0.745
Eucgr.E01734 Eucalyptus grandis Eucgr.E01734 I 0.739
evm.TU.supercontig_1750.2 Carica papaya evm.TU.supercontig_1750.2 I 0.739
evm.TU.supercontig_265.1 Carica papaya evm.TU.supercontig_265.1 I 0.739
LjSGA_042497.2 Lotus japonicus LjSGA_042497.2 I 0.739
Pm003258 Prunus mume Pm003258 N 0.733
Eucgr.B01824 Eucalyptus grandis Eucgr.B01824 I 0.733
evm.TU.contig_26058.1 Carica papaya evm.TU.contig_26058.1 I 0.733
LjSGA_107301.1 Lotus japonicus LjSGA_107301.1 I 0.733
LjSGA_126766.1 Lotus japonicus LjSGA_126766.1 I 0.733
AGL80 Arabidopsis thaliana AT5G48670 D 0.729
Bra018490 Brassica rapa Bra018490 I 0.729
TCM_025670 Theobroma cacao TCM_025670 I 0.729
Bostr.2570s0082 Boechera stricta Bostr.2570s0082 I 0.729
Cagra.1772s0003 Capsella grandiflora Cagra.1772s0003 I 0.729
Carubv10014232m.g Capsella rubella Carubv10014232m.g I 0.729
gene18029-v1.0-hybrid Fragaria vesca gene18029-v1.0-hybrid I 0.729
Bo5g145000 Brassica oleracea Bo5g145000 I 0.727
MTR_4g032290 Medicago truncatula MTR_4g032290 N 0.727
PRUPE_ppa022799mg Prunus persica PRUPE_ppa022799mg N 0.727
TCM_026845 Theobroma cacao TCM_026845 I 0.727
TCM_042799 Theobroma cacao TCM_042799 I 0.727
evm.TU.contig_40485 Carica papaya evm.TU.contig_40485 I 0.727
evm.TU.supercontig_117.19 Carica papaya evm.TU.supercontig_117.19 I 0.727
evm.TU.supercontig_185.2 Carica papaya evm.TU.supercontig_185.2 I 0.727
Gorai.004G229600 Gossypium raimondii Gorai.004G229600 N 0.727
evm.TU.supercontig_265.3 Carica papaya evm.TU.supercontig_265.3 N 0.723
Bra041022 Brassica rapa Bra041022 I 0.711
GSMUA_Achr3G05500_001 Musa acuminata GSMUA_Achr3G05500_001 I 0.711
MTR_4g032260 Medicago truncatula MTR_4g032260 N 0.711
evm.TU.contig_25049.1 Carica papaya evm.TU.contig_25049.1 I 0.711
evm.TU.contig_33457.2 Carica papaya evm.TU.contig_33457.2 I 0.711
evm.TU.supercontig_185.11 Carica papaya evm.TU.supercontig_185.11 I 0.711
Bo2g104810 Brassica oleracea Bo2g104810 I 0.708
evm.TU.supercontig_100.22 Carica papaya evm.TU.supercontig_100.22 N 0.708
MDP0000846004 Malus domestica MDP0000846004 I 0.708
SapurV1A.0442s0180 Salix purpurea SapurV1A.0442s0180 I 0.708
SapurV1A.0442s0190 Salix purpurea SapurV1A.0442s0190 I 0.708
AT3G05860 Arabidopsis thaliana AT3G05860 I 0.705
MTR_5g047580 Medicago truncatula MTR_5g047580 N 0.705
MTR_8g036130 Medicago truncatula MTR_8g036130 N 0.705
Cucsa.224270 Cucumis sativus Cucsa.224270 I 0.705
evm.TU.contig_35868 Carica papaya evm.TU.contig_35868 N 0.705
evm.TU.supercontig_185.7 Carica papaya evm.TU.supercontig_185.7 I 0.705
Lus10022316.g Linum usitatissimum Lus10022316.g I 0.705
Thhalv10002352m.g Eutrema salsugineum Thhalv10002352m.g I 0.705
PRUPE_ppa019749mg Prunus persica PRUPE_ppa019749mg I 0.702
Pm003257 Prunus mume Pm003257 I 0.702
evm.TU.contig_25049.5 Carica papaya evm.TU.contig_25049.5 I 0.702
Gorai.003G105500 Gossypium raimondii Gorai.003G105500 N 0.702