TCM_026845 (Theobroma cacao)
MADS box

TF Information

Pfam ID Interpro ID Gene ID CIS-BP ID Sequence source Animal TF db
PF00319 (SRF-TF) IPR002100 TCM_026845 T256468_2.00 Ensembl (2018-Dec-8) Link out

Directly determined binding motifs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
No direct experiments

Motifs from related TFs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
AGL80
M06994_2.00 		Arabidopsis thaliana
TCACCA
TGGTGA		 Dap-seq
OMalley et al.(2016)
FEM111_col_a 		0.729 0.729
For this family, TFs with SR scores > 0.700 will likely have a similar motif

DNA Binding Domains

Protein ID Domain From To Sequence
EOY11775 MADS box 10 58

Links

Other MADS box family TFs
Other Theobroma cacao TFs

56 Related TFs

Name Species Gene ID Motif Evidence SR
Score		 Action
TCM_025671 Theobroma cacao TCM_025671 I 0.872
TCM_025670 Theobroma cacao TCM_025670 I 0.833
TCM_026842 Theobroma cacao TCM_026842 I 0.812
TCM_042799 Theobroma cacao TCM_042799 I 0.812
30128.m008984 Ricinus communis 30128.m008984 I 0.812
SapurV1A.0066s0310 Salix purpurea SapurV1A.0066s0310 I 0.809
POPTR_0013s01880 Populus trichocarpa POPTR_0013s01880 I 0.792
TCM_042848 Theobroma cacao TCM_042848 N 0.792
Ciclev10006519m.g Citrus clementina Ciclev10006519m.g I 0.792
Ciclev10013728m.g Citrus clementina Ciclev10013728m.g I 0.792
MTR_3g065100 Medicago truncatula MTR_3g065100 I 0.778
Ca_13275 Cicer arietinum Ca_13275 I 0.778
POPTR_0005s00420 Populus trichocarpa POPTR_0005s00420 I 0.771
POPTR_0013s00350 Populus trichocarpa POPTR_0013s00350 I 0.771
TCM_025676 Theobroma cacao TCM_025676 N 0.771
VIT_14s0060g00300 Vitis vinifera VIT_14s0060g00300 I 0.771
cassava19828.m1 Manihot esculenta cassava19828.m1 I 0.771
30199.m000879 Ricinus communis 30199.m000879 I 0.766
Eucgr.E01737 Eucalyptus grandis Eucgr.E01737 I 0.761
LjSGA_104570.1 Lotus japonicus LjSGA_104570.1 I 0.759
PRUPE_ppa018168mg Prunus persica PRUPE_ppa018168mg I 0.756
Pm004396 Prunus mume Pm004396 I 0.756
gene22967-v1.0-hybrid Fragaria vesca gene22967-v1.0-hybrid I 0.750
Thhalv10023873m.g Eutrema salsugineum Thhalv10023873m.g I 0.750
Thhalv10024119m.g Eutrema salsugineum Thhalv10024119m.g I 0.750
PRUPE_ppa019749mg Prunus persica PRUPE_ppa019749mg I 0.745
Pm003257 Prunus mume Pm003257 I 0.745
Ciclev10024463m.g Citrus clementina Ciclev10024463m.g I 0.739
Eucgr.E01733 Eucalyptus grandis Eucgr.E01733 I 0.739
orange1.1g040642m.g Citrus sinensis orange1.1g040642m.g I 0.739
GLYMA18G04760 Glycine max GLYMA18G04760 I 0.733
Cla005226 Citrullus lanatus Cla005226 I 0.733
Cucsa.050930 Cucumis sativus Cucsa.050930 I 0.733
evm.TU.contig_40499.2 Carica papaya evm.TU.contig_40499.2 I 0.733
MDP0000925348 Malus domestica MDP0000925348 I 0.733
LjSGA_107301.1 Lotus japonicus LjSGA_107301.1 I 0.733
LjSGA_126766.1 Lotus japonicus LjSGA_126766.1 I 0.733
AGL80 Arabidopsis thaliana AT5G48670 D 0.729
Bostr.2570s0082 Boechera stricta Bostr.2570s0082 I 0.729
Bostr.2570s0083 Boechera stricta Bostr.2570s0083 I 0.729
Cagra.1772s0003 Capsella grandiflora Cagra.1772s0003 I 0.729
Carubv10014232m.g Capsella rubella Carubv10014232m.g I 0.729
gene18029-v1.0-hybrid Fragaria vesca gene18029-v1.0-hybrid I 0.729
MDP0000846004 Malus domestica MDP0000846004 I 0.729
Ca_06495 Cicer arietinum Ca_06495 I 0.727
mgf026186m Mimulus guttatus mgf026186m I 0.727
Eucgr.E01736 Eucalyptus grandis Eucgr.E01736 I 0.717
GLYMA11G33460 Glycine max GLYMA11G33460 I 0.711
Cla009163 Citrullus lanatus Cla009163 I 0.711
AT3G05860 Arabidopsis thaliana AT3G05860 I 0.708
Bo9g078450 Brassica oleracea Bo9g078450 I 0.708
Bra029469 Brassica rapa Bra029469 I 0.708
evm.TU.contig_36543 Carica papaya evm.TU.contig_36543 I 0.708
gene23924-v1.0-hybrid Fragaria vesca gene23924-v1.0-hybrid I 0.708
Lus10014578.g Linum usitatissimum Lus10014578.g I 0.708
LjSGA_147985.1 Lotus japonicus LjSGA_147985.1 I 0.704