gene18029-v1.0-hybrid (Fragaria vesca)
MADS box

TF Information

Pfam ID Interpro ID Gene ID CIS-BP ID Sequence source
PF00319 (SRF-TF) IPR002100 gene18029-v1.0-hybrid T258341_2.00 JGI:Phytozome (2018-Apr-12)

Directly determined binding motifs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
No direct experiments

Motifs from related TFs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
AGL80
M06994_2.00 		Arabidopsis thaliana
TCACCA
TGGTGA		 Dap-seq
OMalley et al.(2016)
FEM111_col_a 		0.812 0.812
For this family, TFs with SR scores > 0.700 will likely have a similar motif

DNA Binding Domains

Protein ID Domain From To Sequence
mrna18029.1-v1.0-hybrid MADS box 10 58

Links

Other MADS box family TFs
Other Fragaria vesca TFs

121 Related TFs

Name Species Gene ID Motif Evidence SR
Score		 Action
gene22967-v1.0-hybrid Fragaria vesca gene22967-v1.0-hybrid I 0.917
MDP0000846004 Malus domestica MDP0000846004 I 0.917
PRUPE_ppa018168mg Prunus persica PRUPE_ppa018168mg I 0.911
Pm004396 Prunus mume Pm004396 I 0.911
VIT_14s0060g00300 Vitis vinifera VIT_14s0060g00300 I 0.896
cassava19828.m1 Manihot esculenta cassava19828.m1 I 0.896
POPTR_0013s00350 Populus trichocarpa POPTR_0013s00350 I 0.875
POPTR_0013s01880 Populus trichocarpa POPTR_0013s01880 I 0.875
evm.TU.contig_28448.4 Carica papaya evm.TU.contig_28448.4 I 0.875
gene23924-v1.0-hybrid Fragaria vesca gene23924-v1.0-hybrid I 0.875
MDP0000925348 Malus domestica MDP0000925348 I 0.875
evm.TU.contig_40008 Carica papaya evm.TU.contig_40008 I 0.862
POPTR_0005s00420 Populus trichocarpa POPTR_0005s00420 I 0.854
30199.m000879 Ricinus communis 30199.m000879 I 0.854
Bostr.2570s0082 Boechera stricta Bostr.2570s0082 I 0.854
Ciclev10006519m.g Citrus clementina Ciclev10006519m.g I 0.854
Ciclev10013728m.g Citrus clementina Ciclev10013728m.g I 0.854
evm.TU.contig_25049.5 Carica papaya evm.TU.contig_25049.5 I 0.854
evm.TU.supercontig_1750.2 Carica papaya evm.TU.supercontig_1750.2 I 0.854
evm.TU.supercontig_265.1 Carica papaya evm.TU.supercontig_265.1 I 0.854
evm.TU.supercontig_30.166 Carica papaya evm.TU.supercontig_30.166 I 0.854
gene22916-v1.0-hybrid Fragaria vesca gene22916-v1.0-hybrid I 0.854
SapurV1A.0066s0310 Salix purpurea SapurV1A.0066s0310 I 0.854
evm.TU.contig_32899.1 Carica papaya evm.TU.contig_32899.1 I 0.853
evm.TU.contig_33457.2 Carica papaya evm.TU.contig_33457.2 I 0.844
evm.TU.supercontig_185.11 Carica papaya evm.TU.supercontig_185.11 I 0.844
TCM_026842 Theobroma cacao TCM_026842 I 0.833
30128.m008984 Ricinus communis 30128.m008984 I 0.833
evm.TU.contig_40499.2 Carica papaya evm.TU.contig_40499.2 I 0.833
evm.TU.supercontig_1237.1 Carica papaya evm.TU.supercontig_1237.1 I 0.833
evm.TU.supercontig_139.40 Carica papaya evm.TU.supercontig_139.40 I 0.833
Lus10014578.g Linum usitatissimum Lus10014578.g I 0.833
SapurV1A.0442s0180 Salix purpurea SapurV1A.0442s0180 I 0.833
SapurV1A.0442s0190 Salix purpurea SapurV1A.0442s0190 I 0.833
Cla005226 Citrullus lanatus Cla005226 I 0.822
evm.TU.contig_25982.2 Carica papaya evm.TU.contig_25982.2 I 0.822
evm.TU.supercontig_185.9 Carica papaya evm.TU.supercontig_185.9 I 0.822
AGL80 Arabidopsis thaliana AT5G48670 D 0.812
Bra018490 Brassica rapa Bra018490 I 0.812
evm.TU.contig_26058.1 Carica papaya evm.TU.contig_26058.1 I 0.812
evm.TU.supercontig_118.30 Carica papaya evm.TU.supercontig_118.30 I 0.812
Lus10032108.g Linum usitatissimum Lus10032108.g I 0.812
Thhalv10023873m.g Eutrema salsugineum Thhalv10023873m.g I 0.812
Thhalv10024119m.g Eutrema salsugineum Thhalv10024119m.g I 0.812
GLYMA11G33460 Glycine max GLYMA11G33460 I 0.800
Bo2g104810 Brassica oleracea Bo2g104810 I 0.792
Bo9g078450 Brassica oleracea Bo9g078450 I 0.792
Bra029469 Brassica rapa Bra029469 I 0.792
MTR_3g065100 Medicago truncatula MTR_3g065100 I 0.792
PRUPE_ppa019749mg Prunus persica PRUPE_ppa019749mg I 0.792
TCM_025670 Theobroma cacao TCM_025670 I 0.792
TCM_042799 Theobroma cacao TCM_042799 I 0.792
Ca_13275 Cicer arietinum Ca_13275 I 0.792
Pm003257 Prunus mume Pm003257 I 0.792
Cagra.1772s0003 Capsella grandiflora Cagra.1772s0003 I 0.792
Carubv10014232m.g Capsella rubella Carubv10014232m.g I 0.792
evm.TU.contig_25049.1 Carica papaya evm.TU.contig_25049.1 I 0.792
evm.TU.contig_44957 Carica papaya evm.TU.contig_44957 I 0.792
evm.TU.supercontig_117.18 Carica papaya evm.TU.supercontig_117.18 I 0.792
evm.TU.supercontig_185.2 Carica papaya evm.TU.supercontig_185.2 I 0.792
LjT40B16.70.nc Lotus japonicus LjT40B16.70.nc I 0.792
Ciclev10024463m.g Citrus clementina Ciclev10024463m.g I 0.783
Eucgr.E01737 Eucalyptus grandis Eucgr.E01737 I 0.783
orange1.1g040642m.g Citrus sinensis orange1.1g040642m.g I 0.783
GLYMA18G04760 Glycine max GLYMA18G04760 I 0.771
TCM_025671 Theobroma cacao TCM_025671 I 0.771
Cucsa.050930 Cucumis sativus Cucsa.050930 I 0.771
evm.TU.contig_24608 Carica papaya evm.TU.contig_24608 I 0.771
evm.TU.contig_24864.1 Carica papaya evm.TU.contig_24864.1 N 0.771
evm.TU.contig_31147 Carica papaya evm.TU.contig_31147 I 0.771
evm.TU.supercontig_185.8 Carica papaya evm.TU.supercontig_185.8 N 0.771
Thhalv10022373m.g Eutrema salsugineum Thhalv10022373m.g I 0.771
evm.TU.supercontig_185.6 Carica papaya evm.TU.supercontig_185.6 N 0.769
evm.TU.contig_25253.2 Carica papaya evm.TU.contig_25253.2 N 0.766
cassava15247.m1 Manihot esculenta cassava15247.m1 I 0.756
Solyc01g102260.2 Solanum lycopersicum Solyc01g102260.2 I 0.750
mgf026186m Mimulus guttatus mgf026186m I 0.750
evm.TU.contig_26058.2 Carica papaya evm.TU.contig_26058.2 I 0.750
evm.TU.contig_35762 Carica papaya evm.TU.contig_35762 N 0.750
evm.TU.contig_40164 Carica papaya evm.TU.contig_40164 N 0.750
evm.TU.supercontig_135.5 Carica papaya evm.TU.supercontig_135.5 N 0.750
evm.TU.supercontig_265.6 Carica papaya evm.TU.supercontig_265.6 N 0.750
Gorai.004G292000 Gossypium raimondii Gorai.004G292000 I 0.750
chr6.LjT19B22.120.nd Lotus japonicus chr6.LjT19B22.120.nd I 0.750
Eucgr.E01734 Eucalyptus grandis Eucgr.E01734 I 0.739
GLYMA10G28320 Glycine max GLYMA10G28320 N 0.729
GSMUA_Achr2G18400_001 Musa acuminata GSMUA_Achr2G18400_001 N 0.729
GSMUA_Achr3G05500_001 Musa acuminata GSMUA_Achr3G05500_001 I 0.729
TCM_025676 Theobroma cacao TCM_025676 N 0.729
TCM_026845 Theobroma cacao TCM_026845 I 0.729
TCM_042848 Theobroma cacao TCM_042848 N 0.729
Ca_06495 Cicer arietinum Ca_06495 I 0.729
evm.TU.contig_25049.2 Carica papaya evm.TU.contig_25049.2 N 0.729
evm.TU.contig_28448.1 Carica papaya evm.TU.contig_28448.1 N 0.729
evm.TU.contig_35009 Carica papaya evm.TU.contig_35009 I 0.729
evm.TU.contig_36181 Carica papaya evm.TU.contig_36181 I 0.729
evm.TU.contig_38760 Carica papaya evm.TU.contig_38760 N 0.729
evm.TU.supercontig_117.19 Carica papaya evm.TU.supercontig_117.19 I 0.729
evm.TU.supercontig_265.3 Carica papaya evm.TU.supercontig_265.3 N 0.729
evm.TU.supercontig_30.164 Carica papaya evm.TU.supercontig_30.164 N 0.729
evm.TU.supercontig_34.40 Carica papaya evm.TU.supercontig_34.40 N 0.729
evm.TU.supercontig_358.1 Carica papaya evm.TU.supercontig_358.1 N 0.729
gene04949-v1.0-hybrid Fragaria vesca gene04949-v1.0-hybrid I 0.729
gene15899-v1.0-hybrid Fragaria vesca gene15899-v1.0-hybrid N 0.729
Gorai.004G054700 Gossypium raimondii Gorai.004G054700 N 0.729
Thhalv10024162m.g Eutrema salsugineum Thhalv10024162m.g I 0.729
LjSGA_126766.1 Lotus japonicus LjSGA_126766.1 I 0.711
AT3G05860 Arabidopsis thaliana AT3G05860 I 0.708
MTR_1g084950 Medicago truncatula MTR_1g084950 N 0.708
Ca_08369 Cicer arietinum Ca_08369 N 0.708
Cla009163 Citrullus lanatus Cla009163 I 0.708
Aquca_027_00068 Aquilegia coerulea Aquca_027_00068 I 0.708
Eucgr.E01733 Eucalyptus grandis Eucgr.E01733 I 0.708
Eucgr.E01736 Eucalyptus grandis Eucgr.E01736 I 0.708
evm.TU.supercontig_1256.1 Carica papaya evm.TU.supercontig_1256.1 N 0.708
evm.TU.supercontig_185.7 Carica papaya evm.TU.supercontig_185.7 I 0.708
evm.TU.supercontig_34.41 Carica papaya evm.TU.supercontig_34.41 N 0.708
Gorai.004G229700 Gossypium raimondii Gorai.004G229700 N 0.708
Lus10014883.g Linum usitatissimum Lus10014883.g I 0.708
Thhalv10019481m.g Eutrema salsugineum Thhalv10019481m.g I 0.708
TCM_022993 Theobroma cacao TCM_022993 N 0.705