gene15899-v1.0-hybrid (Fragaria vesca)
MADS box

TF Information

Pfam ID Interpro ID Gene ID CIS-BP ID Sequence source
PF00319 (SRF-TF) IPR002100 gene15899-v1.0-hybrid T258335_2.00 JGI:Phytozome (2018-Apr-12)

Directly determined binding motifs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
No direct experiments

Motifs from related TFs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
No TFs with similar DNA binding domains

DNA Binding Domains

Protein ID Domain From To Sequence
mrna15899.1-v1.0-hybrid MADS box 10 58

Links

Other MADS box family TFs
Other Fragaria vesca TFs

35 Related TFs

Name Species Gene ID Motif Evidence SR
Score		 Action
evm.TU.contig_27586 Carica papaya evm.TU.contig_27586 I 0.818
POPTR_0013s00350 Populus trichocarpa POPTR_0013s00350 I 0.792
LjSGA_057783.1 Lotus japonicus LjSGA_057783.1 I 0.778
VIT_14s0060g00300 Vitis vinifera VIT_14s0060g00300 I 0.771
cassava19828.m1 Manihot esculenta cassava19828.m1 I 0.750
gene04949-v1.0-hybrid Fragaria vesca gene04949-v1.0-hybrid I 0.750
SapurV1A.0442s0180 Salix purpurea SapurV1A.0442s0180 I 0.750
SapurV1A.0442s0190 Salix purpurea SapurV1A.0442s0190 I 0.750
30199.m000879 Ricinus communis 30199.m000879 I 0.745
GLYMA18G04760 Glycine max GLYMA18G04760 I 0.733
MTR_3g065100 Medicago truncatula MTR_3g065100 I 0.733
Ca_13275 Cicer arietinum Ca_13275 I 0.733
evm.TU.contig_26058.1 Carica papaya evm.TU.contig_26058.1 I 0.733
evm.TU.contig_33457.2 Carica papaya evm.TU.contig_33457.2 I 0.733
evm.TU.supercontig_185.11 Carica papaya evm.TU.supercontig_185.11 I 0.733
POPTR_0005s00420 Populus trichocarpa POPTR_0005s00420 I 0.729
Ciclev10006519m.g Citrus clementina Ciclev10006519m.g I 0.729
Ciclev10013728m.g Citrus clementina Ciclev10013728m.g I 0.729
gene18029-v1.0-hybrid Fragaria vesca gene18029-v1.0-hybrid I 0.729
gene22967-v1.0-hybrid Fragaria vesca gene22967-v1.0-hybrid I 0.729
gene23924-v1.0-hybrid Fragaria vesca gene23924-v1.0-hybrid I 0.729
MDP0000846004 Malus domestica MDP0000846004 I 0.729
evm.TU.supercontig_1750.2 Carica papaya evm.TU.supercontig_1750.2 I 0.717
evm.TU.supercontig_265.1 Carica papaya evm.TU.supercontig_265.1 I 0.717
GLYMA11G33460 Glycine max GLYMA11G33460 I 0.711
PRUPE_ppa018168mg Prunus persica PRUPE_ppa018168mg I 0.711
Cla005226 Citrullus lanatus Cla005226 I 0.711
Pm004396 Prunus mume Pm004396 I 0.711
evm.TU.contig_25049.1 Carica papaya evm.TU.contig_25049.1 I 0.711
POPTR_0013s01880 Populus trichocarpa POPTR_0013s01880 I 0.708
Bostr.2570s0082 Boechera stricta Bostr.2570s0082 I 0.708
evm.TU.contig_28448.4 Carica papaya evm.TU.contig_28448.4 I 0.708
evm.TU.supercontig_185.2 Carica papaya evm.TU.supercontig_185.2 I 0.708
evm.TU.supercontig_30.166 Carica papaya evm.TU.supercontig_30.166 I 0.708
evm.TU.contig_25049.5 Carica papaya evm.TU.contig_25049.5 I 0.702