Pm004396 (Prunus mume)
MADS box

TF Information

Pfam ID Interpro ID Gene ID CIS-BP ID Sequence source
PF00319 (SRF-TF) IPR002100 Pm004396 T257032_2.00 GigaDB (2015-Oct-22)

Directly determined binding motifs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
No direct experiments

Motifs from related TFs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
AGL80
M06994_2.00 		Arabidopsis thaliana
TCACCA
TGGTGA		 Dap-seq
OMalley et al.(2016)
FEM111_col_a 		0.867 0.867
For this family, TFs with SR scores > 0.700 will likely have a similar motif

DNA Binding Domains

Protein ID Domain From To Sequence
Pm004396 MADS box 10 55

Links

Other MADS box family TFs
Other Prunus mume TFs

134 Related TFs

Name Species Gene ID Motif Evidence SR
Score		 Action
PRUPE_ppa018168mg Prunus persica PRUPE_ppa018168mg I 1.000
MDP0000925348 Malus domestica MDP0000925348 I 0.956
MDP0000846004 Malus domestica MDP0000846004 I 0.933
POPTR_0013s01880 Populus trichocarpa POPTR_0013s01880 I 0.911
30199.m000879 Ricinus communis 30199.m000879 I 0.911
gene18029-v1.0-hybrid Fragaria vesca gene18029-v1.0-hybrid I 0.911
evm.TU.contig_28448.4 Carica papaya evm.TU.contig_28448.4 I 0.889
evm.TU.supercontig_1750.2 Carica papaya evm.TU.supercontig_1750.2 I 0.889
evm.TU.supercontig_265.1 Carica papaya evm.TU.supercontig_265.1 I 0.889
gene22967-v1.0-hybrid Fragaria vesca gene22967-v1.0-hybrid I 0.889
Lus10014578.g Linum usitatissimum Lus10014578.g I 0.889
SapurV1A.0066s0310 Salix purpurea SapurV1A.0066s0310 I 0.889
AGL80 Arabidopsis thaliana AT5G48670 D 0.867
MTR_3g065100 Medicago truncatula MTR_3g065100 I 0.867
POPTR_0013s00350 Populus trichocarpa POPTR_0013s00350 I 0.867
TCM_026842 Theobroma cacao TCM_026842 I 0.867
VIT_14s0060g00300 Vitis vinifera VIT_14s0060g00300 I 0.867
Ca_13275 Cicer arietinum Ca_13275 I 0.867
cassava19828.m1 Manihot esculenta cassava19828.m1 I 0.867
Ciclev10006519m.g Citrus clementina Ciclev10006519m.g I 0.867
Ciclev10013728m.g Citrus clementina Ciclev10013728m.g I 0.867
evm.TU.contig_25049.5 Carica papaya evm.TU.contig_25049.5 I 0.867
evm.TU.contig_40499.2 Carica papaya evm.TU.contig_40499.2 I 0.867
evm.TU.supercontig_1237.1 Carica papaya evm.TU.supercontig_1237.1 I 0.867
Lus10032108.g Linum usitatissimum Lus10032108.g I 0.867
GLYMA18G04760 Glycine max GLYMA18G04760 I 0.844
POPTR_0005s00420 Populus trichocarpa POPTR_0005s00420 I 0.844
Cla005226 Citrullus lanatus Cla005226 I 0.844
Cucsa.050930 Cucumis sativus Cucsa.050930 I 0.844
Bostr.2570s0082 Boechera stricta Bostr.2570s0082 I 0.844
evm.TU.contig_26058.1 Carica papaya evm.TU.contig_26058.1 I 0.844
evm.TU.supercontig_30.166 Carica papaya evm.TU.supercontig_30.166 I 0.844
gene23924-v1.0-hybrid Fragaria vesca gene23924-v1.0-hybrid I 0.844
SapurV1A.0442s0180 Salix purpurea SapurV1A.0442s0180 I 0.844
SapurV1A.0442s0190 Salix purpurea SapurV1A.0442s0190 I 0.844
LjT40B16.70.nc Lotus japonicus LjT40B16.70.nc I 0.844
GLYMA11G33460 Glycine max GLYMA11G33460 I 0.822
mgf026186m Mimulus guttatus mgf026186m I 0.822
Ciclev10024463m.g Citrus clementina Ciclev10024463m.g I 0.822
Eucgr.E01737 Eucalyptus grandis Eucgr.E01737 I 0.822
evm.TU.contig_24608 Carica papaya evm.TU.contig_24608 I 0.822
evm.TU.contig_25049.1 Carica papaya evm.TU.contig_25049.1 I 0.822
evm.TU.contig_31147 Carica papaya evm.TU.contig_31147 I 0.822
evm.TU.contig_33457.2 Carica papaya evm.TU.contig_33457.2 I 0.822
evm.TU.contig_44957 Carica papaya evm.TU.contig_44957 I 0.822
evm.TU.supercontig_117.18 Carica papaya evm.TU.supercontig_117.18 I 0.822
evm.TU.supercontig_185.11 Carica papaya evm.TU.supercontig_185.11 I 0.822
evm.TU.supercontig_185.2 Carica papaya evm.TU.supercontig_185.2 I 0.822
gene22916-v1.0-hybrid Fragaria vesca gene22916-v1.0-hybrid I 0.822
orange1.1g040642m.g Citrus sinensis orange1.1g040642m.g I 0.822
chr6.LjT19B22.120.nd Lotus japonicus chr6.LjT19B22.120.nd I 0.822
30128.m008984 Ricinus communis 30128.m008984 I 0.812
Bo9g078450 Brassica oleracea Bo9g078450 I 0.800
Bra029469 Brassica rapa Bra029469 I 0.800
GSMUA_Achr3G05500_001 Musa acuminata GSMUA_Achr3G05500_001 I 0.800
Solyc01g102260.2 Solanum lycopersicum Solyc01g102260.2 I 0.800
cassava15247.m1 Manihot esculenta cassava15247.m1 I 0.800
Aquca_027_00068 Aquilegia coerulea Aquca_027_00068 I 0.800
evm.TU.contig_25253.2 Carica papaya evm.TU.contig_25253.2 N 0.800
evm.TU.contig_25982.2 Carica papaya evm.TU.contig_25982.2 I 0.800
evm.TU.contig_26058.2 Carica papaya evm.TU.contig_26058.2 I 0.800
evm.TU.supercontig_139.40 Carica papaya evm.TU.supercontig_139.40 I 0.800
evm.TU.supercontig_185.9 Carica papaya evm.TU.supercontig_185.9 I 0.800
evm.TU.supercontig_265.6 Carica papaya evm.TU.supercontig_265.6 N 0.800
Gorai.004G292000 Gossypium raimondii Gorai.004G292000 I 0.800
Thhalv10023873m.g Eutrema salsugineum Thhalv10023873m.g I 0.800
Thhalv10024119m.g Eutrema salsugineum Thhalv10024119m.g I 0.800
Bra018490 Brassica rapa Bra018490 I 0.778
PRUPE_ppa019749mg Prunus persica PRUPE_ppa019749mg I 0.778
TCM_025670 Theobroma cacao TCM_025670 I 0.778
TCM_025671 Theobroma cacao TCM_025671 I 0.778
Ca_06495 Cicer arietinum Ca_06495 I 0.778
Pm003257 Prunus mume Pm003257 I 0.778
Aquca_007_00647 Aquilegia coerulea Aquca_007_00647 I 0.778
Bostr.2392s0039 Boechera stricta Bostr.2392s0039 I 0.778
Cagra.1772s0003 Capsella grandiflora Cagra.1772s0003 I 0.778
Carubv10014232m.g Capsella rubella Carubv10014232m.g I 0.778
Eucgr.E01733 Eucalyptus grandis Eucgr.E01733 I 0.778
Eucgr.E01736 Eucalyptus grandis Eucgr.E01736 I 0.778
evm.TU.contig_24864.1 Carica papaya evm.TU.contig_24864.1 N 0.778
evm.TU.contig_25049.2 Carica papaya evm.TU.contig_25049.2 N 0.778
evm.TU.contig_28448.1 Carica papaya evm.TU.contig_28448.1 N 0.778
evm.TU.contig_35009 Carica papaya evm.TU.contig_35009 I 0.778
evm.TU.contig_36181 Carica papaya evm.TU.contig_36181 I 0.778
evm.TU.contig_38760 Carica papaya evm.TU.contig_38760 N 0.778
evm.TU.contig_40164 Carica papaya evm.TU.contig_40164 N 0.778
evm.TU.supercontig_117.19 Carica papaya evm.TU.supercontig_117.19 I 0.778
evm.TU.supercontig_118.30 Carica papaya evm.TU.supercontig_118.30 I 0.778
evm.TU.supercontig_185.8 Carica papaya evm.TU.supercontig_185.8 N 0.778
evm.TU.supercontig_265.3 Carica papaya evm.TU.supercontig_265.3 N 0.778
evm.TU.supercontig_30.164 Carica papaya evm.TU.supercontig_30.164 N 0.778
evm.TU.supercontig_358.1 Carica papaya evm.TU.supercontig_358.1 N 0.778
Al_scaffold_0003_569 Arabidopsis lyrata Al_scaffold_0003_569 I 0.756
Bo2g104810 Brassica oleracea Bo2g104810 I 0.756
GLYMA03G19880 Glycine max GLYMA03G19880 N 0.756
GSMUA_Achr2G18400_001 Musa acuminata GSMUA_Achr2G18400_001 N 0.756
TCM_026845 Theobroma cacao TCM_026845 I 0.756
TCM_042799 Theobroma cacao TCM_042799 I 0.756
Cla009163 Citrullus lanatus Cla009163 I 0.756
Eucgr.E01734 Eucalyptus grandis Eucgr.E01734 I 0.756
evm.TU.contig_35762 Carica papaya evm.TU.contig_35762 N 0.756
evm.TU.supercontig_1256.1 Carica papaya evm.TU.supercontig_1256.1 N 0.756
evm.TU.supercontig_185.7 Carica papaya evm.TU.supercontig_185.7 I 0.756
evm.TU.supercontig_34.40 Carica papaya evm.TU.supercontig_34.40 N 0.756
Thhalv10012000m.g Eutrema salsugineum Thhalv10012000m.g I 0.756
Thhalv10022373m.g Eutrema salsugineum Thhalv10022373m.g I 0.756
LjSGA_107301.1 Lotus japonicus LjSGA_107301.1 I 0.756
LjSGA_126766.1 Lotus japonicus LjSGA_126766.1 I 0.756
GSMUA_Achr3G08500_001 Musa acuminata GSMUA_Achr3G08500_001 N 0.733
PRUPE_ppa022799mg Prunus persica PRUPE_ppa022799mg N 0.733
TCM_025676 Theobroma cacao TCM_025676 N 0.733
TCM_042848 Theobroma cacao TCM_042848 N 0.733
evm.TU.contig_28089 Carica papaya evm.TU.contig_28089 I 0.733
evm.TU.contig_35868 Carica papaya evm.TU.contig_35868 N 0.733
evm.TU.supercontig_185.12 Carica papaya evm.TU.supercontig_185.12 I 0.733
Lus10014883.g Linum usitatissimum Lus10014883.g I 0.733
MDP0000133671 Malus domestica MDP0000133671 N 0.733
LjSGA_018236.1 Lotus japonicus LjSGA_018236.1 I 0.733
LjSGA_042497.2 Lotus japonicus LjSGA_042497.2 I 0.733
PDK_20s1688321g001 Phoenix dactylifera PDK_20s1688321g001 N 0.733
Pm003258 Prunus mume Pm003258 N 0.711
Ciclev10013876m.g Citrus clementina Ciclev10013876m.g N 0.711
evm.TU.contig_25253.1 Carica papaya evm.TU.contig_25253.1 N 0.711
evm.TU.contig_36543 Carica papaya evm.TU.contig_36543 I 0.711
evm.TU.supercontig_135.5 Carica papaya evm.TU.supercontig_135.5 N 0.711
evm.TU.supercontig_34.41 Carica papaya evm.TU.supercontig_34.41 N 0.711
gene15899-v1.0-hybrid Fragaria vesca gene15899-v1.0-hybrid N 0.711
Gorai.004G229700 Gossypium raimondii Gorai.004G229700 N 0.711
Gorai.013G210700 Gossypium raimondii Gorai.013G210700 N 0.711
Lus10022316.g Linum usitatissimum Lus10022316.g I 0.711
MDP0000236438 Malus domestica MDP0000236438 N 0.711
MDP0000299637 Malus domestica MDP0000299637 N 0.711
orange1.1g038848m.g Citrus sinensis orange1.1g038848m.g N 0.711
Thhalv10024162m.g Eutrema salsugineum Thhalv10024162m.g I 0.711