evm.TU.supercontig_139.40 (Carica papaya)
MADS box

TF Information

Pfam ID Interpro ID Gene ID CIS-BP ID Sequence source
PF00319 (SRF-TF) IPR002100 evm.TU.supercontig_139.40 T258172_2.00 JGI:Phytozome (2018-Apr-12)

Directly determined binding motifs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
No direct experiments

Motifs from related TFs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
AGL80
M06994_2.00 		Arabidopsis thaliana
TCACCA
TGGTGA		 Dap-seq
OMalley et al.(2016)
FEM111_col_a 		0.729 0.729
For this family, TFs with SR scores > 0.700 will likely have a similar motif

DNA Binding Domains

Protein ID Domain From To Sequence
evm.model.supercontig_139.40 MADS box 10 58

Links

Other MADS box family TFs
Other Carica papaya TFs

56 Related TFs

Name Species Gene ID Motif Evidence SR
Score		 Action
evm.TU.contig_25049.5 Carica papaya evm.TU.contig_25049.5 I 0.833
gene18029-v1.0-hybrid Fragaria vesca gene18029-v1.0-hybrid I 0.833
evm.TU.contig_28448.4 Carica papaya evm.TU.contig_28448.4 I 0.812
evm.TU.contig_44957 Carica papaya evm.TU.contig_44957 I 0.812
gene22967-v1.0-hybrid Fragaria vesca gene22967-v1.0-hybrid I 0.812
MDP0000846004 Malus domestica MDP0000846004 I 0.812
PRUPE_ppa018168mg Prunus persica PRUPE_ppa018168mg I 0.800
Pm004396 Prunus mume Pm004396 I 0.800
VIT_14s0060g00300 Vitis vinifera VIT_14s0060g00300 I 0.792
cassava19828.m1 Manihot esculenta cassava19828.m1 I 0.792
evm.TU.supercontig_1750.2 Carica papaya evm.TU.supercontig_1750.2 I 0.792
evm.TU.supercontig_185.9 Carica papaya evm.TU.supercontig_185.9 I 0.792
evm.TU.supercontig_265.1 Carica papaya evm.TU.supercontig_265.1 I 0.792
evm.TU.supercontig_30.166 Carica papaya evm.TU.supercontig_30.166 I 0.792
gene23924-v1.0-hybrid Fragaria vesca gene23924-v1.0-hybrid I 0.792
MDP0000925348 Malus domestica MDP0000925348 I 0.792
POPTR_0013s00350 Populus trichocarpa POPTR_0013s00350 I 0.771
POPTR_0013s01880 Populus trichocarpa POPTR_0013s01880 I 0.771
30128.m008984 Ricinus communis 30128.m008984 I 0.771
evm.TU.contig_40499.2 Carica papaya evm.TU.contig_40499.2 I 0.771
evm.TU.supercontig_1237.1 Carica papaya evm.TU.supercontig_1237.1 I 0.771
POPTR_0005s00420 Populus trichocarpa POPTR_0005s00420 I 0.750
30199.m000879 Ricinus communis 30199.m000879 I 0.750
Bostr.2570s0082 Boechera stricta Bostr.2570s0082 I 0.750
Ciclev10006519m.g Citrus clementina Ciclev10006519m.g I 0.750
Ciclev10013728m.g Citrus clementina Ciclev10013728m.g I 0.750
evm.TU.contig_25982.2 Carica papaya evm.TU.contig_25982.2 I 0.750
evm.TU.contig_26058.1 Carica papaya evm.TU.contig_26058.1 I 0.750
evm.TU.contig_33457.2 Carica papaya evm.TU.contig_33457.2 I 0.750
evm.TU.supercontig_118.30 Carica papaya evm.TU.supercontig_118.30 I 0.750
evm.TU.supercontig_135.5 Carica papaya evm.TU.supercontig_135.5 N 0.750
evm.TU.supercontig_185.11 Carica papaya evm.TU.supercontig_185.11 I 0.750
evm.TU.supercontig_185.2 Carica papaya evm.TU.supercontig_185.2 I 0.750
gene22916-v1.0-hybrid Fragaria vesca gene22916-v1.0-hybrid I 0.750
SapurV1A.0066s0310 Salix purpurea SapurV1A.0066s0310 I 0.750
AGL80 Arabidopsis thaliana AT5G48670 D 0.729
PRUPE_ppa019749mg Prunus persica PRUPE_ppa019749mg I 0.729
TCM_026842 Theobroma cacao TCM_026842 I 0.729
Pm003257 Prunus mume Pm003257 I 0.729
evm.TU.contig_24608 Carica papaya evm.TU.contig_24608 I 0.729
evm.TU.contig_25049.1 Carica papaya evm.TU.contig_25049.1 I 0.729
Lus10014578.g Linum usitatissimum Lus10014578.g I 0.729
Lus10032108.g Linum usitatissimum Lus10032108.g I 0.729
SapurV1A.0442s0180 Salix purpurea SapurV1A.0442s0180 I 0.729
SapurV1A.0442s0190 Salix purpurea SapurV1A.0442s0190 I 0.729
Thhalv10023873m.g Eutrema salsugineum Thhalv10023873m.g I 0.729
Thhalv10024119m.g Eutrema salsugineum Thhalv10024119m.g I 0.729
Bra018490 Brassica rapa Bra018490 I 0.708
GSMUA_Achr2G18400_001 Musa acuminata GSMUA_Achr2G18400_001 N 0.708
TCM_025670 Theobroma cacao TCM_025670 I 0.708
TCM_042799 Theobroma cacao TCM_042799 I 0.708
evm.TU.contig_25253.2 Carica papaya evm.TU.contig_25253.2 N 0.708
evm.TU.contig_35009 Carica papaya evm.TU.contig_35009 I 0.708
evm.TU.contig_35762 Carica papaya evm.TU.contig_35762 N 0.708
evm.TU.contig_40164 Carica papaya evm.TU.contig_40164 N 0.708
evm.TU.supercontig_1256.1 Carica papaya evm.TU.supercontig_1256.1 N 0.708