evm.TU.contig_36543 (Carica papaya)
MADS box

TF Information

Pfam ID Interpro ID Gene ID CIS-BP ID Sequence source
PF00319 (SRF-TF) IPR002100 evm.TU.contig_36543 T258098_2.00 JGI:Phytozome (2018-Apr-12)

Directly determined binding motifs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
No direct experiments

Motifs from related TFs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
AGL80
M06994_2.00 		Arabidopsis thaliana
TCACCA
TGGTGA		 Dap-seq
OMalley et al.(2016)
FEM111_col_a 		0.729 0.729
For this family, TFs with SR scores > 0.700 will likely have a similar motif

DNA Binding Domains

Protein ID Domain From To Sequence
evm.TU.contig_36543.1 MADS box 10 58

Links

Other MADS box family TFs
Other Carica papaya TFs

24 Related TFs

Name Species Gene ID Motif Evidence SR
Score		 Action
evm.TU.contig_39415 Carica papaya evm.TU.contig_39415 I 0.958
evm.TU.contig_40189 Carica papaya evm.TU.contig_40189 I 0.958
evm.TU.supercontig_51.120 Carica papaya evm.TU.supercontig_51.120 N 0.958
evm.TU.supercontig_51.124 Carica papaya evm.TU.supercontig_51.124 N 0.889
evm.TU.supercontig_1153.1 Carica papaya evm.TU.supercontig_1153.1 N 0.812
evm.TU.supercontig_118.9 Carica papaya evm.TU.supercontig_118.9 N 0.750
AGL80 Arabidopsis thaliana AT5G48670 D 0.729
POPTR_0013s01880 Populus trichocarpa POPTR_0013s01880 I 0.729
TCM_025670 Theobroma cacao TCM_025670 I 0.729
Bostr.2570s0082 Boechera stricta Bostr.2570s0082 I 0.729
PRUPE_ppa018168mg Prunus persica PRUPE_ppa018168mg I 0.711
Pm004396 Prunus mume Pm004396 I 0.711
Bo9g078450 Brassica oleracea Bo9g078450 I 0.708
Bra029469 Brassica rapa Bra029469 I 0.708
POPTR_0005s00420 Populus trichocarpa POPTR_0005s00420 I 0.708
POPTR_0013s00350 Populus trichocarpa POPTR_0013s00350 I 0.708
TCM_026845 Theobroma cacao TCM_026845 I 0.708
VIT_14s0060g00300 Vitis vinifera VIT_14s0060g00300 I 0.708
30128.m008984 Ricinus communis 30128.m008984 I 0.708
cassava19828.m1 Manihot esculenta cassava19828.m1 I 0.708
Ciclev10006519m.g Citrus clementina Ciclev10006519m.g I 0.708
Ciclev10013728m.g Citrus clementina Ciclev10013728m.g I 0.708
gene22967-v1.0-hybrid Fragaria vesca gene22967-v1.0-hybrid I 0.708
30199.m000879 Ricinus communis 30199.m000879 I 0.702