Gorai.004G229700 (Gossypium raimondii)
MADS box

TF Information

Pfam ID Interpro ID Gene ID CIS-BP ID Sequence source
PF00319 (SRF-TF) IPR002100 Gorai.004G229700 T258400_2.00 JGI:Phytozome (2018-Apr-12)

Directly determined binding motifs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
No direct experiments

Motifs from related TFs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
No TFs with similar DNA binding domains

DNA Binding Domains

Protein ID Domain From To Sequence
Gorai.004G229700.1 MADS box 10 56

Links

Other MADS box family TFs
Other Gossypium raimondii TFs

42 Related TFs

Name Species Gene ID Motif Evidence SR
Score		 Action
Gorai.004G229600 Gossypium raimondii Gorai.004G229600 N 0.957
Gorai.004G292000 Gossypium raimondii Gorai.004G292000 I 0.851
Gorai.003G105500 Gossypium raimondii Gorai.003G105500 N 0.830
evm.TU.contig_27586 Carica papaya evm.TU.contig_27586 I 0.773
evm.TU.contig_43368 Carica papaya evm.TU.contig_43368 I 0.773
Gorai.004G054700 Gossypium raimondii Gorai.004G054700 N 0.771
Ca_06495 Cicer arietinum Ca_06495 I 0.750
evm.TU.supercontig_22.66 Carica papaya evm.TU.supercontig_22.66 N 0.750
Gorai.013G210200 Gossypium raimondii Gorai.013G210200 I 0.750
Gorai.013G168300 Gossypium raimondii Gorai.013G168300 I 0.737
LjT40B16.70.nc Lotus japonicus LjT40B16.70.nc I 0.733
cassava19828.m1 Manihot esculenta cassava19828.m1 I 0.729
evm.TU.contig_31147 Carica papaya evm.TU.contig_31147 I 0.727
evm.TU.contig_35009 Carica papaya evm.TU.contig_35009 I 0.727
evm.TU.supercontig_1750.1 Carica papaya evm.TU.supercontig_1750.1 I 0.727
evm.TU.contig_24608 Carica papaya evm.TU.contig_24608 I 0.723
evm.TU.supercontig_1256.1 Carica papaya evm.TU.supercontig_1256.1 N 0.723
evm.TU.supercontig_265.6 Carica papaya evm.TU.supercontig_265.6 N 0.723
Al_scaffold_0003_569 Arabidopsis lyrata Al_scaffold_0003_569 I 0.721
GLYMA18G04760 Glycine max GLYMA18G04760 I 0.711
MTR_3g065100 Medicago truncatula MTR_3g065100 I 0.711
PRUPE_ppa018168mg Prunus persica PRUPE_ppa018168mg I 0.711
Ca_13275 Cicer arietinum Ca_13275 I 0.711
Pm004396 Prunus mume Pm004396 I 0.711
evm.TU.contig_38760 Carica papaya evm.TU.contig_38760 N 0.711
evm.TU.contig_40499.2 Carica papaya evm.TU.contig_40499.2 I 0.711
evm.TU.supercontig_30.164 Carica papaya evm.TU.supercontig_30.164 N 0.711
evm.TU.supercontig_34.40 Carica papaya evm.TU.supercontig_34.40 N 0.711
MDP0000925348 Malus domestica MDP0000925348 I 0.711
VIT_14s0060g00300 Vitis vinifera VIT_14s0060g00300 I 0.708
gene18029-v1.0-hybrid Fragaria vesca gene18029-v1.0-hybrid I 0.708
gene22967-v1.0-hybrid Fragaria vesca gene22967-v1.0-hybrid I 0.708
Lus10014578.g Linum usitatissimum Lus10014578.g I 0.708
Gorai.013G155300 Gossypium raimondii Gorai.013G155300 N 0.706
evm.TU.contig_25253.1 Carica papaya evm.TU.contig_25253.1 N 0.705
evm.TU.contig_28089 Carica papaya evm.TU.contig_28089 I 0.705
evm.TU.supercontig_185.12 Carica papaya evm.TU.supercontig_185.12 I 0.705
LjSGA_147985.1 Lotus japonicus LjSGA_147985.1 I 0.704
Solyc01g102260.2 Solanum lycopersicum Solyc01g102260.2 I 0.702
evm.TU.contig_25253.2 Carica papaya evm.TU.contig_25253.2 N 0.702
evm.TU.contig_28448.1 Carica papaya evm.TU.contig_28448.1 N 0.702
evm.TU.supercontig_265.3 Carica papaya evm.TU.supercontig_265.3 N 0.702