Gorai.013G168300 (Gossypium raimondii)
MADS box

TF Information

Pfam ID Interpro ID Gene ID CIS-BP ID Sequence source
PF00319 (SRF-TF) IPR002100 Gorai.013G168300 T258507_2.00 JGI:Phytozome (2018-Apr-12)

Directly determined binding motifs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
No direct experiments

Motifs from related TFs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
AGL80
M06994_2.00 		Arabidopsis thaliana
TCACCA
TGGTGA		 Dap-seq
OMalley et al.(2016)
FEM111_col_a 		0.763 0.763
For this family, TFs with SR scores > 0.700 will likely have a similar motif

DNA Binding Domains

Protein ID Domain From To Sequence
Gorai.013G168300.1 MADS box 10 47

Links

Other MADS box family TFs
Other Gossypium raimondii TFs

12 Related TFs

Name Species Gene ID Motif Evidence SR
Score		 Action
Gorai.013G210200 Gossypium raimondii Gorai.013G210200 I 0.917
evm.TU.contig_43368 Carica papaya evm.TU.contig_43368 I 0.818
TCM_026842 Theobroma cacao TCM_026842 I 0.816
chr6.LjT19B22.120.nd Lotus japonicus chr6.LjT19B22.120.nd I 0.816
LjSGA_147985.1 Lotus japonicus LjSGA_147985.1 I 0.778
Solyc01g102260.2 Solanum lycopersicum Solyc01g102260.2 I 0.763
Gorai.013G210400 Gossypium raimondii Gorai.013G210400 I 0.756
Gorai.004G229700 Gossypium raimondii Gorai.004G229700 N 0.737
evm.TU.contig_27586 Carica papaya evm.TU.contig_27586 I 0.727
evm.TU.contig_35265 Carica papaya evm.TU.contig_35265 I 0.727
Ca_03592 Cicer arietinum Ca_03592 N 0.711
evm.TU.supercontig_22.66 Carica papaya evm.TU.supercontig_22.66 N 0.700