LjSGA_104570.1 (Lotus japonicus)
MADS box

TF Information

Pfam ID Interpro ID Gene ID CIS-BP ID Sequence source
PF00319 (SRF-TF) IPR002100 LjSGA_104570.1 T259401_2.00 Superfamily (2010-Oct-26)

Directly determined binding motifs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
No direct experiments

Motifs from related TFs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
AGL80
M06994_2.00 		Arabidopsis thaliana
TCACCA
TGGTGA		 Dap-seq
OMalley et al.(2016)
FEM111_col_a 		0.828 0.828
For this family, TFs with SR scores > 0.700 will likely have a similar motif

DNA Binding Domains

Protein ID Domain From To Sequence
LjSGA_104570.1 MADS box 21 53

Links

Other MADS box family TFs
Other Lotus japonicus TFs

47 Related TFs

Name Species Gene ID Motif Evidence SR
Score		 Action
Bo9g078450 Brassica oleracea Bo9g078450 I 0.862
Bra029469 Brassica rapa Bra029469 I 0.862
TCM_026842 Theobroma cacao TCM_026842 I 0.862
Thhalv10022373m.g Eutrema salsugineum Thhalv10022373m.g I 0.862
chr6.LjT19B22.120.nd Lotus japonicus chr6.LjT19B22.120.nd I 0.862
POPTR_0013s01880 Populus trichocarpa POPTR_0013s01880 I 0.828
Solyc01g102260.2 Solanum lycopersicum Solyc01g102260.2 I 0.828
SapurV1A.0066s0310 Salix purpurea SapurV1A.0066s0310 I 0.828
Thhalv10012000m.g Eutrema salsugineum Thhalv10012000m.g I 0.828
Bo5g145000 Brassica oleracea Bo5g145000 I 0.793
POPTR_0005s00420 Populus trichocarpa POPTR_0005s00420 I 0.793
TCM_042799 Theobroma cacao TCM_042799 I 0.793
VIT_14s0060g00300 Vitis vinifera VIT_14s0060g00300 I 0.793
Bostr.2392s0039 Boechera stricta Bostr.2392s0039 I 0.793
evm.TU.contig_28448.1 Carica papaya evm.TU.contig_28448.1 N 0.793
Thhalv10024162m.g Eutrema salsugineum Thhalv10024162m.g I 0.793
Thhalv10027038m.g Eutrema salsugineum Thhalv10027038m.g I 0.793
Al_scaffold_0003_569 Arabidopsis lyrata Al_scaffold_0003_569 I 0.759
AT3G05860 Arabidopsis thaliana AT3G05860 I 0.759
MTR_4g032290 Medicago truncatula MTR_4g032290 N 0.759
TCM_025671 Theobroma cacao TCM_025671 I 0.759
TCM_026845 Theobroma cacao TCM_026845 I 0.759
TCM_042848 Theobroma cacao TCM_042848 N 0.759
Cla009163 Citrullus lanatus Cla009163 I 0.759
Aquca_007_00647 Aquilegia coerulea Aquca_007_00647 I 0.759
Eucgr.E01736 Eucalyptus grandis Eucgr.E01736 I 0.759
gene22916-v1.0-hybrid Fragaria vesca gene22916-v1.0-hybrid I 0.759
Lus10014578.g Linum usitatissimum Lus10014578.g I 0.759
MDP0000925348 Malus domestica MDP0000925348 I 0.759
Thhalv10019681m.g Eutrema salsugineum Thhalv10019681m.g I 0.759
Thhalv10019758m.g Eutrema salsugineum Thhalv10019758m.g N 0.759
GLYMA03G19880 Glycine max GLYMA03G19880 N 0.724
MTR_3g466980 Medicago truncatula MTR_3g466980 N 0.724
MTR_4g031910 Medicago truncatula MTR_4g031910 N 0.724
Cucsa.224270 Cucumis sativus Cucsa.224270 I 0.724
evm.TU.contig_24608 Carica papaya evm.TU.contig_24608 I 0.724
evm.TU.contig_28448.4 Carica papaya evm.TU.contig_28448.4 I 0.724
evm.TU.contig_40499.2 Carica papaya evm.TU.contig_40499.2 I 0.724
evm.TU.supercontig_117.19 Carica papaya evm.TU.supercontig_117.19 I 0.724
evm.TU.supercontig_265.6 Carica papaya evm.TU.supercontig_265.6 N 0.724
evm.TU.supercontig_30.166 Carica papaya evm.TU.supercontig_30.166 I 0.724
Gorai.013G210700 Gossypium raimondii Gorai.013G210700 N 0.724
Lus10032108.g Linum usitatissimum Lus10032108.g I 0.724
Thhalv10002349m.g Eutrema salsugineum Thhalv10002349m.g I 0.724
Thhalv10019833m.g Eutrema salsugineum Thhalv10019833m.g I 0.724
LjT40B16.70.nc Lotus japonicus LjT40B16.70.nc I 0.724
MTR_7g055800 Medicago truncatula MTR_7g055800 N 0.708