Ca_08934 (Cicer arietinum)
MADS box

TF Information

Pfam ID Interpro ID Gene ID CIS-BP ID Sequence source
PF00319 (SRF-TF) IPR002100 Ca_08934 T256901_2.00 GigaDB (2015-Oct-22)

Directly determined binding motifs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
No direct experiments

Motifs from related TFs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
AGL80
M06994_2.00 		Arabidopsis thaliana
TCACCA
TGGTGA		 Dap-seq
OMalley et al.(2016)
FEM111_col_a 		0.705 0.705
For this family, TFs with SR scores > 0.700 will likely have a similar motif

DNA Binding Domains

Protein ID Domain From To Sequence
Ca_08934 MADS box 10 53

Links

Other MADS box family TFs
Other Cicer arietinum TFs

67 Related TFs

Name Species Gene ID Motif Evidence SR
Score		 Action
MTR_4g032290 Medicago truncatula MTR_4g032290 N 0.886
MTR_8g036130 Medicago truncatula MTR_8g036130 N 0.886
MTR_4g031910 Medicago truncatula MTR_4g031910 N 0.864
MTR_4g032260 Medicago truncatula MTR_4g032260 N 0.864
MTR_2g035610 Medicago truncatula MTR_2g035610 N 0.818
chr6.LjT19B22.120.nd Lotus japonicus chr6.LjT19B22.120.nd I 0.818
Ca_06495 Cicer arietinum Ca_06495 I 0.795
LjSGA_042497.2 Lotus japonicus LjSGA_042497.2 I 0.795
GLYMA18G05916 Glycine max GLYMA18G05916 N 0.778
MTR_4g032620 Medicago truncatula MTR_4g032620 N 0.778
TCM_026842 Theobroma cacao TCM_026842 I 0.773
Aquca_007_00647 Aquilegia coerulea Aquca_007_00647 I 0.773
Aquca_027_00068 Aquilegia coerulea Aquca_027_00068 I 0.773
Thhalv10012000m.g Eutrema salsugineum Thhalv10012000m.g I 0.773
LjSGA_018236.1 Lotus japonicus LjSGA_018236.1 I 0.773
Bo5g145000 Brassica oleracea Bo5g145000 I 0.750
Bra018490 Brassica rapa Bra018490 I 0.750
GLYMA18G04760 Glycine max GLYMA18G04760 I 0.750
MTR_3g065100 Medicago truncatula MTR_3g065100 I 0.750
POPTR_0005s00420 Populus trichocarpa POPTR_0005s00420 I 0.750
Solyc01g102260.2 Solanum lycopersicum Solyc01g102260.2 I 0.750
VIT_14s0060g00300 Vitis vinifera VIT_14s0060g00300 I 0.750
Ca_13275 Cicer arietinum Ca_13275 I 0.750
Gorai.004G292000 Gossypium raimondii Gorai.004G292000 I 0.750
Lus10032108.g Linum usitatissimum Lus10032108.g I 0.750
LjSGA_107301.1 Lotus japonicus LjSGA_107301.1 I 0.750
Eucgr.E01737 Eucalyptus grandis Eucgr.E01737 I 0.739
Bra041022 Brassica rapa Bra041022 I 0.733
cassava15247.m1 Manihot esculenta cassava15247.m1 I 0.733
LjSGA_126766.1 Lotus japonicus LjSGA_126766.1 I 0.733
MTR_4g028800 Medicago truncatula MTR_4g028800 N 0.732
Bo2g104810 Brassica oleracea Bo2g104810 I 0.727
Bo9g078450 Brassica oleracea Bo9g078450 I 0.727
Bra029469 Brassica rapa Bra029469 I 0.727
GLYMA11G30640 Glycine max GLYMA11G30640 N 0.727
GLYMA18G05976 Glycine max GLYMA18G05976 N 0.727
POPTR_0013s00350 Populus trichocarpa POPTR_0013s00350 I 0.727
POPTR_0013s01880 Populus trichocarpa POPTR_0013s01880 I 0.727
Cla009163 Citrullus lanatus Cla009163 I 0.727
Cucsa.050930 Cucumis sativus Cucsa.050930 I 0.727
Eucgr.B01824 Eucalyptus grandis Eucgr.B01824 I 0.727
Eucgr.E01733 Eucalyptus grandis Eucgr.E01733 I 0.727
Eucgr.E01736 Eucalyptus grandis Eucgr.E01736 I 0.727
evm.TU.supercontig_117.18 Carica papaya evm.TU.supercontig_117.18 I 0.727
gene22916-v1.0-hybrid Fragaria vesca gene22916-v1.0-hybrid I 0.727
Lus10014578.g Linum usitatissimum Lus10014578.g I 0.727
SapurV1A.0066s0310 Salix purpurea SapurV1A.0066s0310 I 0.727
Thhalv10023873m.g Eutrema salsugineum Thhalv10023873m.g I 0.727
Thhalv10024119m.g Eutrema salsugineum Thhalv10024119m.g I 0.727
Thhalv10024162m.g Eutrema salsugineum Thhalv10024162m.g I 0.727
GLYMA11G33460 Glycine max GLYMA11G33460 I 0.711
GSMUA_Achr3G05500_001 Musa acuminata GSMUA_Achr3G05500_001 I 0.711
Gorai.013G210200 Gossypium raimondii Gorai.013G210200 I 0.708
Al_scaffold_0003_569 Arabidopsis lyrata Al_scaffold_0003_569 I 0.705
GLYMA11G30690 Glycine max GLYMA11G30690 N 0.705
POPTR_0016s06850 Populus trichocarpa POPTR_0016s06850 N 0.705
Cucsa.224270 Cucumis sativus Cucsa.224270 I 0.705
Aquca_029_00010 Aquilegia coerulea Aquca_029_00010 N 0.705
evm.TU.contig_24608 Carica papaya evm.TU.contig_24608 I 0.705
evm.TU.supercontig_117.19 Carica papaya evm.TU.supercontig_117.19 I 0.705
MDP0000846004 Malus domestica MDP0000846004 I 0.705
SapurV1A.0258s0020 Salix purpurea SapurV1A.0258s0020 N 0.705
SapurV1A.0980s0020 Salix purpurea SapurV1A.0980s0020 N 0.705
Thhalv10022373m.g Eutrema salsugineum Thhalv10022373m.g I 0.705
LjT40B16.70.nc Lotus japonicus LjT40B16.70.nc I 0.705
PDK_20s1688321g001 Phoenix dactylifera PDK_20s1688321g001 N 0.705
evm.TU.supercontig_22.66 Carica papaya evm.TU.supercontig_22.66 N 0.700