evm.TU.contig_25253.5 (Carica papaya)
MADS box

TF Information

Pfam ID Interpro ID Gene ID CIS-BP ID Sequence source
PF00319 (SRF-TF) IPR002100 evm.TU.contig_25253.5 T258038_2.00 JGI:Phytozome (2018-Apr-12)

Directly determined binding motifs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
No direct experiments

Motifs from related TFs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
AGL80
M06994_2.00 		Arabidopsis thaliana
TCACCA
TGGTGA		 Dap-seq
OMalley et al.(2016)
FEM111_col_a 		0.724 0.724
For this family, TFs with SR scores > 0.700 will likely have a similar motif

DNA Binding Domains

Protein ID Domain From To Sequence
evm.TU.contig_25253.5 MADS box 1 30

Links

Other MADS box family TFs
Other Carica papaya TFs

31 Related TFs

Name Species Gene ID Motif Evidence SR
Score		 Action
evm.TU.contig_40008 Carica papaya evm.TU.contig_40008 I 0.931
evm.TU.supercontig_30.166 Carica papaya evm.TU.supercontig_30.166 I 0.862
POPTR_0005s00420 Populus trichocarpa POPTR_0005s00420 I 0.793
evm.TU.contig_28448.4 Carica papaya evm.TU.contig_28448.4 I 0.793
evm.TU.contig_35762 Carica papaya evm.TU.contig_35762 N 0.793
gene22967-v1.0-hybrid Fragaria vesca gene22967-v1.0-hybrid I 0.793
gene23924-v1.0-hybrid Fragaria vesca gene23924-v1.0-hybrid I 0.793
MDP0000925348 Malus domestica MDP0000925348 I 0.793
evm.TU.supercontig_185.6 Carica papaya evm.TU.supercontig_185.6 N 0.769
Bra018490 Brassica rapa Bra018490 I 0.759
POPTR_0013s00350 Populus trichocarpa POPTR_0013s00350 I 0.759
VIT_14s0060g00300 Vitis vinifera VIT_14s0060g00300 I 0.759
evm.TU.contig_40164 Carica papaya evm.TU.contig_40164 N 0.759
gene22916-v1.0-hybrid Fragaria vesca gene22916-v1.0-hybrid I 0.759
evm.TU.contig_32899.1 Carica papaya evm.TU.contig_32899.1 I 0.735
Bo2g104810 Brassica oleracea Bo2g104810 I 0.724
POPTR_0013s01880 Populus trichocarpa POPTR_0013s01880 I 0.724
evm.TU.contig_31147 Carica papaya evm.TU.contig_31147 I 0.724
evm.TU.contig_40499.2 Carica papaya evm.TU.contig_40499.2 I 0.724
evm.TU.supercontig_1237.1 Carica papaya evm.TU.supercontig_1237.1 I 0.724
evm.TU.supercontig_135.3 Carica papaya evm.TU.supercontig_135.3 N 0.724
evm.TU.supercontig_185.2 Carica papaya evm.TU.supercontig_185.2 I 0.724
evm.TU.supercontig_265.6 Carica papaya evm.TU.supercontig_265.6 N 0.724
Lus10014578.g Linum usitatissimum Lus10014578.g I 0.724
Thhalv10022373m.g Eutrema salsugineum Thhalv10022373m.g I 0.724
Thhalv10023873m.g Eutrema salsugineum Thhalv10023873m.g I 0.724
Thhalv10024119m.g Eutrema salsugineum Thhalv10024119m.g I 0.724
Thhalv10027038m.g Eutrema salsugineum Thhalv10027038m.g I 0.724
evm.TU.contig_28448.2 Carica papaya evm.TU.contig_28448.2 N 0.720
evm.TU.contig_43908 Carica papaya evm.TU.contig_43908 N 0.720
evm.TU.supercontig_185.4 Carica papaya evm.TU.supercontig_185.4 N 0.720