CIS-BP Database: Catalog of Inferred Sequence Binding Preferences
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Bo5g145010
(
Brassica oleracea
)
MADS box
TF Information
Pfam ID
Interpro ID
Gene ID
CIS-BP ID
Sequence source
Animal TF db
PF00319 (SRF-TF)
IPR002100
Bo5g145010
T253130_2.00
Ensembl (2018-Dec-8)
Link out
Directly determined binding motifs
Name/Motif ID
Species
Forward
Reverse
Type/Study/Study ID
SR
Score
DBD
Identity
No direct experiments
Motifs from related TFs
Name/Motif ID
Species
Forward
Reverse
Type/Study/Study ID
SR
Score
DBD
Identity
No TFs with similar DNA binding domains
DNA Binding Domains
Protein ID
Domain
From
To
Sequence
Bo5g145010.1
MADS box
10
56
YITNDSMRKSTFNKRKKGFFKKIHELSVLCGIQACAVIYSPFSSTPD
Links
Other
MADS box
family TFs
Other
Brassica oleracea
TFs
7 Related TFs
Name
Species
Gene ID
Motif Evidence
SR
Score
Action
Bra039404
Brassica rapa
Bra039404
N
1.000
Thhalv10021183m.g
Eutrema salsugineum
Thhalv10021183m.g
I
0.864
AT3G05860
Arabidopsis thaliana
AT3G05860
I
0.826
Bostr.2570s0083
Boechera stricta
Bostr.2570s0083
I
0.771
Cagra.1772s0002
Capsella grandiflora
Cagra.1772s0002
N
0.771
Carubv10015167m.g
Capsella rubella
Carubv10015167m.g
N
0.771
evm.TU.contig_43368
Carica papaya
evm.TU.contig_43368
I
0.727