Eucgr.K00201 (Eucalyptus grandis)
MADS box

TF Information

Pfam ID Interpro ID Gene ID CIS-BP ID Sequence source
PF00319 (SRF-TF) IPR002100 Eucgr.K00201 T258008_2.00 JGI:Phytozome (2018-Apr-12)

Directly determined binding motifs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
No direct experiments

Motifs from related TFs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
Q9ATE7_PETHY
M11010_2.00 		Petunia x hybrida Transfac license required
 Transfac license required
 Transfac
Matys et al.(2006)
P$FBP22_01 		0.750 0.750
AGL42
M06995_2.00 		Arabidopsis thaliana
RATGATG
CATCATY		 Dap-seq
OMalley et al.(2016)
AGL42_col_a 		0.708 0.708
SOC1
M08425_2.00 		Arabidopsis thaliana
CCAAAAAWRGAAAND
HNTTTCYWTTTTTGG		 ChIP-chip
Mathelier et al.(2014)
MA0554.1 		0.708 0.708
SOC1
M10915_2.00 		Arabidopsis thaliana Transfac license required
 Transfac license required
 Transfac
Matys et al.(2006)
P$AGL20_01 		0.708 0.708
MADS5
M10970_2.00 		Oryza sativa Transfac license required
 Transfac license required
 Transfac
Matys et al.(2006)
P$MADS5_02 		0.708 0.708
For this family, TFs with SR scores > 0.700 will likely have a similar motif

DNA Binding Domains

Protein ID Domain From To Sequence
Eucgr.K00201.1 MADS box 10 57
Eucgr.K00201.2 MADS box 10 57
Eucgr.K00201.3 MADS box 10 57
Eucgr.K00201.4 MADS box 10 57
Eucgr.K00201.5 MADS box 10 57
Eucgr.K00201.6 MADS box 10 57

Links

Other MADS box family TFs
Other Eucalyptus grandis TFs

197 Related TFs

Name Species Gene ID Motif Evidence SR
Score		 Action
AT3G27970 Arabidopsis thaliana AT3G27970 N
Bo2g146110 Brassica oleracea Bo2g146110 N
Bra033033 Brassica rapa Bra033033 N
Ciclev10015764m.g Citrus clementina Ciclev10015764m.g N
Cucsa.159050 Cucumis sativus Cucsa.159050 N
Eucgr.I01798 Eucalyptus grandis Eucgr.I01798 N
evm.TU.supercontig_39.83 Carica papaya evm.TU.supercontig_39.83 N
GLYMA19G11090 Glycine max GLYMA19G11090 N
Gorai.007G340600 Gossypium raimondii Gorai.007G340600 N
Lus10008787.g Linum usitatissimum Lus10008787.g N
Lus10022230.g Linum usitatissimum Lus10022230.g N
MDP0000196563 Malus domestica MDP0000196563 N
orange1.1g018558m.g Citrus sinensis orange1.1g018558m.g N
Pavir.Aa00794 Panicum virgatum Pavir.Aa00794 N
Pavir.Ab02840 Panicum virgatum Pavir.Ab02840 N
Pm015710 Prunus mume Pm015710 N
PRUPE_ppa008078mg Prunus persica PRUPE_ppa008078mg N
Si019142m.g Setaria italica Si019142m.g N