CIS-BP Database: Catalog of Inferred Sequence Binding Preferences
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evm.TU.contig_35510
(
Carica papaya
)
MADS box
TF Information
Pfam ID
Interpro ID
Gene ID
CIS-BP ID
Sequence source
PF00319 (SRF-TF)
IPR002100
evm.TU.contig_35510
T258086_2.00
JGI:Phytozome (2018-Apr-12)
Directly determined binding motifs
Name/Motif ID
Species
Forward
Reverse
Type/Study/Study ID
SR
Score
DBD
Identity
No direct experiments
Motifs from related TFs
Name/Motif ID
Species
Forward
Reverse
Type/Study/Study ID
SR
Score
DBD
Identity
No TFs with similar DNA binding domains
DNA Binding Domains
Protein ID
Domain
From
To
Sequence
evm.TU.contig_35510.1
MADS box
3
27
KMNNESNLQVTFSKRRAGLSRRRKV
Links
Other
MADS box
family TFs
Other
Carica papaya
TFs
7 Related TFs
Name
Species
Gene ID
Motif Evidence
SR
Score
Action
evm.TU.contig_28241.1
Carica papaya
evm.TU.contig_28241.1
N
0.720
evm.TU.contig_35713
Carica papaya
evm.TU.contig_35713
N
0.720
evm.TU.contig_37489
Carica papaya
evm.TU.contig_37489
N
0.750
evm.TU.contig_41623
Carica papaya
evm.TU.contig_41623
N
0.720
evm.TU.supercontig_106.18
Carica papaya
evm.TU.supercontig_106.18
N
0.760
evm.TU.supercontig_106.19
Carica papaya
evm.TU.supercontig_106.19
N
0.760
evm.TU.supercontig_695.5
Carica papaya
evm.TU.supercontig_695.5
N
0.720