CIS-BP Database: Catalog of Inferred Sequence Binding Preferences
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evm.TU.supercontig_43.109
(
Carica papaya
)
MADS box
TF Information
Pfam ID
Interpro ID
Gene ID
CIS-BP ID
Sequence source
PF00319 (SRF-TF)
IPR002100
evm.TU.supercontig_43.109
T258250_2.00
JGI:Phytozome (2018-Apr-12)
Directly determined binding motifs
Name/Motif ID
Species
Forward
Reverse
Type/Study/Study ID
SR
Score
DBD
Identity
No direct experiments
Motifs from related TFs
Name/Motif ID
Species
Forward
Reverse
Type/Study/Study ID
SR
Score
DBD
Identity
No TFs with similar DNA binding domains
DNA Binding Domains
Protein ID
Domain
From
To
Sequence
evm.model.supercontig_43.109
MADS box
12
62
RETKEQRAVTFSKRRRGLFNKAAELCVLCDFQVAVLVSSPNPAKLNKFYTF
Links
Other
MADS box
family TFs
Other
Carica papaya
TFs
7 Related TFs
Name
Species
Gene ID
Motif Evidence
SR
Score
Action
MTERF2
Bos taurus
ENSBTAG00000010144
N
MTERF2
Callithrix jacchus
ENSCJAG00000015094
N
MTERF2
Homo sapiens
ENSG00000120832
N
MTERF2
Gorilla gorilla
ENSGGOG00000025492
N
MTERF2
Monodelphis domestica
ENSMODG00000001589
N
Mterf2
Mus musculus
ENSMUSG00000049038
N
ENSNLEG00000006719
Nomascus leucogenys
ENSNLEG00000006719
N
MTERF2
Ornithorhynchus anatinus
ENSOANG00000005531
N
MTERF2
Ochotona princeps
ENSOPRG00000008669
N
ENSP00000240050-D1
Bos grunniens
ENSP00000240050-D1
N
MTERF2
Procavia capensis
ENSPCAG00000008234
N
ENSPPYG00000004910
Pongo abelii
ENSPPYG00000004910
N
MTERF2
Pan troglodytes
ENSPTRG00000005395
N
ENSSTOG00000010181
Ictidomys tridecemlineatus
ENSSTOG00000010181
N
MTERF2
Tursiops truncatus
ENSTTRG00000012809
N
MTERF2
Vicugna pacos
ENSVPAG00000008539
N
Myotis_brandtii_Cry1_10020414
Myotis brandtii
Myotis_brandtii_Cry1_10020414
N