CIS-BP Database: Catalog of Inferred Sequence Binding Preferences
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evm.TU.supercontig_43.109
(
Carica papaya
)
MADS box
TF Information
Pfam ID
Interpro ID
Gene ID
CIS-BP ID
Sequence source
PF00319 (SRF-TF)
IPR002100
evm.TU.supercontig_43.109
T258250_2.00
JGI:Phytozome (2018-Apr-12)
Directly determined binding motifs
Name/Motif ID
Species
Forward
Reverse
Type/Study/Study ID
SR
Score
DBD
Identity
No direct experiments
Motifs from related TFs
Name/Motif ID
Species
Forward
Reverse
Type/Study/Study ID
SR
Score
DBD
Identity
No TFs with similar DNA binding domains
DNA Binding Domains
Protein ID
Domain
From
To
Sequence
evm.model.supercontig_43.109
MADS box
12
62
RETKEQRAVTFSKRRRGLFNKAAELCVLCDFQVAVLVSSPNPAKLNKFYTF
Links
Other
MADS box
family TFs
Other
Carica papaya
TFs
7 Related TFs
Name
Species
Gene ID
Motif Evidence
SR
Score
Action
BHLH104
Arabidopsis thaliana
AT4G14410
D
Bo1g102270
Brassica oleracea
Bo1g102270
I
Bo4g126940
Brassica oleracea
Bo4g126940
I
Bo7g040830
Brassica oleracea
Bo7g040830
I
Bostr.0597s0053
Boechera stricta
Bostr.0597s0053
I
Bra014923
Brassica rapa
Bra014923
I
Bra041033
Brassica rapa
Bra041033
I
Cagra.1718s0002
Capsella grandiflora
Cagra.1718s0002
I
Ca_23174
Cicer arietinum
Ca_23174
I
Ciclev10005872m.g
Citrus clementina
Ciclev10005872m.g
I
Cla021854
Citrullus lanatus
Cla021854
I
Cucsa.255290
Cucumis sativus
Cucsa.255290
I
evm.TU.supercontig_44.78
Carica papaya
evm.TU.supercontig_44.78
I
bHLH104
Arabidopsis lyrata
fgenesh2_kg.7__2895__AT4G14410.2
I
gene11436-v1.0-hybrid
Fragaria vesca
gene11436-v1.0-hybrid
I
GLYMA10G01010
Glycine max
GLYMA10G01010
I
GLYMA20G22010
Glycine max
GLYMA20G22010
I
Gorai.011G172500
Gossypium raimondii
Gorai.011G172500
I
Lus10022186.g
Linum usitatissimum
Lus10022186.g
I
MTR_1g043430
Medicago truncatula
MTR_1g043430
I
orange1.1g028060m.g
Citrus sinensis
orange1.1g028060m.g
I
PRUPE_ppa011217mg
Prunus persica
PRUPE_ppa011217mg
I
Solyc10g006510.2
Solanum lycopersicum
Solyc10g006510.2
I
Thhalv10025927m.g
Eutrema salsugineum
Thhalv10025927m.g
I