CIS-BP Database: Catalog of Inferred Sequence Binding Preferences
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28180.m000391
(
Ricinus communis
)
MADS box
TF Information
Pfam ID
Interpro ID
Gene ID
CIS-BP ID
Sequence source
PF00319 (SRF-TF)
IPR002100
28180.m000391
T257132_2.00
JGI (2012-Mar-17)
Directly determined binding motifs
Name/Motif ID
Species
Forward
Reverse
Type/Study/Study ID
SR
Score
DBD
Identity
No direct experiments
Motifs from related TFs
Name/Motif ID
Species
Forward
Reverse
Type/Study/Study ID
SR
Score
DBD
Identity
No TFs with similar DNA binding domains
DNA Binding Domains
Protein ID
Domain
From
To
Sequence
28180.m000391
MADS box
12
59
RETKKQRSVSFTKRRYGLFNKAAELFMLCDAQLALLVSSPCSRKVYSF
Links
Other
MADS box
family TFs
Other
Ricinus communis
TFs
4 Related TFs
Name
Species
Gene ID
Motif Evidence
SR
Score
Action
27893.m000228
Ricinus communis
27893.m000228
N
0.851
cassava9486.m1
Manihot esculenta
cassava9486.m1
N
0.830
evm.TU.supercontig_1046.4
Carica papaya
evm.TU.supercontig_1046.4
N
0.723
evm.TU.supercontig_43.109
Carica papaya
evm.TU.supercontig_43.109
N
0.702