orange1.1g027470m.g (Citrus sinensis)
MADS box

TF Information

Pfam ID Interpro ID Gene ID CIS-BP ID Sequence source
PF00319 (SRF-TF) IPR002100 orange1.1g027470m.g T258797_2.00 JGI:Phytozome (2018-Apr-12)

Directly determined binding motifs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
No direct experiments

Motifs from related TFs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
Q8VWZ4_MALDO
M11026_2.00 		Malus domestica Transfac license required
 Transfac license required
 Transfac
Matys et al.(2006)
P$MADS13_01 		0.896 0.896
Q40513_TOBAC
M11001_2.00 		Nicotiana tabacum Transfac license required
 Transfac license required
 Transfac
Matys et al.(2006)
P$DEF_01 		0.833 0.833
AP3
M08146_2.00 		Arabidopsis thaliana
WDCCMAAARWRGHAA
TTDCYWYTTTKGGHW		 ChIP-seq
Mathelier et al.(2014)
MA0556.1 		0.812 0.812
MADS2_PETHY
M10998_2.00 		Petunia x hybrida Transfac license required
 Transfac license required
 Transfac
Matys et al.(2006)
P$MADS2_01 		0.812 0.812
AP3
M10919_2.00 		Arabidopsis thaliana Transfac license required
 Transfac license required
 Transfac
Matys et al.(2006)
P$MADSB_Q2 		0.812 0.812
MADS16
M10971_2.00 		Oryza sativa Transfac license required
 Transfac license required
 Transfac
Matys et al.(2006)
P$MADS16_01 		0.792 0.792
Q9AVU7_MALDO
M11027_2.00 		Malus domestica Transfac license required
 Transfac license required
 Transfac
Matys et al.(2006)
P$PI_01 		0.771 0.771
squamosa
M02697_2.00 		Antirrhinum majus
MYAWAWAWRGHAAN
NTTDCYWTWTWTRK		 SELEX
Mathelier et al.(2014)
MA0082.1 		0.708 0.708
SOC1
M08425_2.00 		Arabidopsis thaliana
CCAAAAAWRGAAAND
HNTTTCYWTTTTTGG		 ChIP-chip
Mathelier et al.(2014)
MA0554.1 		0.708 0.708
SOC1
M10915_2.00 		Arabidopsis thaliana Transfac license required
 Transfac license required
 Transfac
Matys et al.(2006)
P$AGL20_01 		0.708 0.708
SEP2
M10916_2.00 		Arabidopsis thaliana Transfac license required
 Transfac license required
 Transfac
Matys et al.(2006)
P$AGL4_01 		0.708 0.708
FBP1_PETHY
M10996_2.00 		Petunia x hybrida Transfac license required
 Transfac license required
 Transfac
Matys et al.(2006)
P$FBP1_01 		0.708 0.708
Q9ATE3_PETHY
M11008_2.00 		Petunia x hybrida Transfac license required
 Transfac license required
 Transfac
Matys et al.(2006)
P$FBP28_01 		0.708 0.708
Q8VWZ2_MALDO
M11024_2.00 		Malus domestica Transfac license required
 Transfac license required
 Transfac
Matys et al.(2006)
P$MADS15_02 		0.708 0.708
MADS50
M10968_2.00 		Oryza sativa Transfac license required
 Transfac license required
 Transfac
Matys et al.(2006)
P$MADS50_01 		0.708 0.708
Q38742_ANTMA
M11000_2.00 		Antirrhinum majus Transfac license required
 Transfac license required
 Transfac
Matys et al.(2006)
P$SQUA_01 		0.708 0.708
For this family, TFs with SR scores > 0.700 will likely have a similar motif

DNA Binding Domains

Protein ID Domain From To Sequence
orange1.1g027470m MADS box 10 57

Links

Other MADS box family TFs
Other Citrus sinensis TFs

225 Related TFs

Name Species Gene ID Motif Evidence SR
Score		 Action
AMTR_s00102p00046460 Amborella trichopoda AMTR_s00102p00046460 N
AMTR_s00102p00056000 Amborella trichopoda AMTR_s00102p00056000 N
Aquca_019_00196 Aquilegia coerulea Aquca_019_00196 N
FIT Arabidopsis thaliana AT2G28160 N
Bo3g040310 Brassica oleracea Bo3g040310 N
Bo4g071850 Brassica oleracea Bo4g071850 N
Bo4g165090 Brassica oleracea Bo4g165090 N
Bostr.27991s0112 Boechera stricta Bostr.27991s0112 N
Bra000495 Brassica rapa Bra000495 N
Bra011972 Brassica rapa Bra011972 N
Bra034392 Brassica rapa Bra034392 N
BRADI5G07720 Brachypodium distachyon BRADI5G07720 N
Cagra.12562s0002 Capsella grandiflora Cagra.12562s0002 N
Carubv10023654m.g Capsella rubella Carubv10023654m.g N
cassava28523.m1 Manihot esculenta cassava28523.m1 N
Ca_17453 Cicer arietinum Ca_17453 N
chr3.CM0070.320.nc Lotus japonicus chr3.CM0070.320.nc N
chr3.CM0396.580.nc Lotus japonicus chr3.CM0396.580.nc N
Ciclev10003738m.g Citrus clementina Ciclev10003738m.g N
Ciclev10029810m.g Citrus clementina Ciclev10029810m.g N
Ciclev10030052m.g Citrus clementina Ciclev10030052m.g N
Cla008847 Citrullus lanatus Cla008847 N
Cucsa.385700 Cucumis sativus Cucsa.385700 N
Eucgr.B03931 Eucalyptus grandis Eucgr.B03931 N
evm.TU.contig_28125.2 Carica papaya evm.TU.contig_28125.2 N
FIT1 Arabidopsis lyrata fgenesh2_kg.4__753__AT2G28160.1 N
gene24607-v1.0-hybrid Fragaria vesca gene24607-v1.0-hybrid N
gene24608-v1.0-hybrid Fragaria vesca gene24608-v1.0-hybrid N
GLYMA11G19850 Glycine max GLYMA11G19850 N
GLYMA12G08640 Glycine max GLYMA12G08640 N
GLYMA12G30240 Glycine max GLYMA12G30240 N
GLYMA13G39650 Glycine max GLYMA13G39650 N
Gorai.009G090400 Gossypium raimondii Gorai.009G090400 N
GRMZM2G107672 Zea mays GRMZM2G107672 N
GRMZM2G173521 Zea mays GRMZM2G173521 N
GSMUA_Achr6G27600_001 Musa acuminata GSMUA_Achr6G27600_001 N
LPERR04G07210 Leersia perrieri LPERR04G07210 N
Lus10016151.g Linum usitatissimum Lus10016151.g N
mgf022253m Mimulus guttatus mgf022253m N
mgf025442m Mimulus guttatus mgf025442m N
MLOC_6707 Hordeum vulgare MLOC_6707 N
MTR_2g084280 Medicago truncatula MTR_2g084280 N
MTR_4g057270 Medicago truncatula MTR_4g057270 N
OB04G17410 Oryza brachyantha OB04G17410 N
OBART04G10120 Oryza barthii OBART04G10120 N
OGLUM04G09730 Oryza glumaepatula OGLUM04G09730 N
OLONG_016577 Oryza longistaminata OLONG_016577 N
ONIVA04G07960 Oryza nivara ONIVA04G07960 N
OPUNC04G08160 Oryza punctata OPUNC04G08160 N
orange1.1g021355m.g Citrus sinensis orange1.1g021355m.g N
orange1.1g042465m.g Citrus sinensis orange1.1g042465m.g N
ORGLA02G0343900 Oryza glaberrima ORGLA02G0343900 N
ORUFI04G11150 Oryza rufipogon ORUFI04G11150 N
OS04G0381700 Oryza sativa OS04G0381700 N
Pavir.Ga01979 Panicum virgatum Pavir.Ga01979 N
Pavir.J28741 Panicum virgatum Pavir.J28741 N
Pavir.J29678 Panicum virgatum Pavir.J29678 N
PDK_20s1479721g001 Phoenix dactylifera PDK_20s1479721g001 N
PGSC0003DMG400019017 Solanum tuberosum PGSC0003DMG400019017 N
PK26582.1 Cannabis sativa PK26582.1 N
Pm001154 Prunus mume Pm001154 N
FIT1 Populus trichocarpa POPTR_0009s01100 N
PRUPE_ppa018718mg Prunus persica PRUPE_ppa018718mg N
SapurV1A.1382s0060 Salix purpurea SapurV1A.1382s0060 N
Sb06g012030 Sorghum bicolor Sb06g012030 N
Si010468m.g Setaria italica Si010468m.g N
Si010533m.g Setaria italica Si010533m.g N
Solyc06g051550.2 Solanum lycopersicum Solyc06g051550.2 N
TCM_041590 Theobroma cacao TCM_041590 N
Thhalv10016957m.g Eutrema salsugineum Thhalv10016957m.g N
Traes_2AL_088338613 Triticum aestivum Traes_2AL_088338613 N
Traes_2BL_F442E87DD Triticum aestivum Traes_2BL_F442E87DD N
Traes_2DL_47E8C44C6 Triticum aestivum Traes_2DL_47E8C44C6 N
FIT1 Vitis vinifera VIT_06s0061g00720 N