CIS-BP Database: Catalog of Inferred Sequence Binding Preferences
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Thhalv10002346m.g
(
Eutrema salsugineum
)
MADS box
TF Information
Pfam ID
Interpro ID
Gene ID
CIS-BP ID
Sequence source
PF00319 (SRF-TF)
IPR002100
Thhalv10002346m.g
T259095_2.00
JGI:Phytozome (2018-Apr-12)
Directly determined binding motifs
Name/Motif ID
Species
Forward
Reverse
Type/Study/Study ID
SR
Score
DBD
Identity
No direct experiments
Motifs from related TFs
Name/Motif ID
Species
Forward
Reverse
Type/Study/Study ID
SR
Score
DBD
Identity
AGL80
M06994_2.00
Arabidopsis thaliana
TCACCA
TGGTGA
Dap-seq
OMalley et al.(2016)
FEM111_col_a
0.745
0.745
For this family, TFs with SR scores >
0.700
will likely have a similar motif
DNA Binding Domains
Protein ID
Domain
From
To
Sequence
Thhalv10002346m
MADS box
10
57
FIENNSSRKATFQKRKKGILKKVKEISTLCGVTACAIIYSPYTSNPDV
Links
Other
MADS box
family TFs
Other
Eutrema salsugineum
TFs
39 Related TFs
Name
Species
Gene ID
Motif Evidence
SR
Score
Action
AC198518.3_FG005
Zea mays
AC198518.3_FG005
N
BGIOSGA013618
Oryza indica
BGIOSGA013618
N
BGIOSGA037460
Oryza indica
BGIOSGA037460
N
BRADI4G06567
Brachypodium distachyon
BRADI4G06567
N
BRADI4G12615
Brachypodium distachyon
BRADI4G12615
N
Ca_05643
Cicer arietinum
Ca_05643
N
chr5.CM0200.490.nc
Lotus japonicus
chr5.CM0200.490.nc
N
chr5.CM0200.500.nc
Lotus japonicus
chr5.CM0200.500.nc
N
F775_23312
Aegilops tauschii
F775_23312
N
gene12191-v1.0-hybrid
Fragaria vesca
gene12191-v1.0-hybrid
N
GRMZM2G165188
Zea mays
GRMZM2G165188
N
LPERR03G29580
Leersia perrieri
LPERR03G29580
N
MDP0000876738
Malus domestica
MDP0000876738
N
MTR_1g106470
Medicago truncatula
MTR_1g106470
N
OB03G42180
Oryza brachyantha
OB03G42180
N
OB11G25500
Oryza brachyantha
OB11G25500
N
OBART11G20580
Oryza barthii
OBART11G20580
N
OBART12G13380
Oryza barthii
OBART12G13380
N
OGLUM03G34950
Oryza glumaepatula
OGLUM03G34950
N
OGLUM11G20000
Oryza glumaepatula
OGLUM11G20000
N
OGLUM12G15010
Oryza glumaepatula
OGLUM12G15010
N
OLONG_003723
Oryza longistaminata
OLONG_003723
N
OLONG_021754
Oryza longistaminata
OLONG_021754
N
OLONG_028675
Oryza longistaminata
OLONG_028675
N
OMERI03G32400
Oryza meridionalis
OMERI03G32400
N
ONIVA03G36690
Oryza nivara
ONIVA03G36690
N
ONIVA11G20620
Oryza nivara
ONIVA11G20620
N
OPUNC03G32220
Oryza punctata
OPUNC03G32220
N
OPUNC11G17200
Oryza punctata
OPUNC11G17200
N
ORGLA03G0322200
Oryza glaberrima
ORGLA03G0322200
N
ORGLA10G0168100
Oryza glaberrima
ORGLA10G0168100
N
ORGLA11G0169400
Oryza glaberrima
ORGLA11G0169400
N
ORGLA12G0196200
Oryza glaberrima
ORGLA12G0196200
N
ORUFI03G36640
Oryza rufipogon
ORUFI03G36640
N
ORUFI11G22390
Oryza rufipogon
ORUFI11G22390
N
ORUFI12G14590
Oryza rufipogon
ORUFI12G14590
N
OS11G0634700
Oryza sativa
OS11G0634700
N
Pavir.Ca02388
Panicum virgatum
Pavir.Ca02388
N
Pavir.Ca02532
Panicum virgatum
Pavir.Ca02532
N
Pavir.Cb00430
Panicum virgatum
Pavir.Cb00430
N
Pavir.Ha00126
Panicum virgatum
Pavir.Ha00126
N
Pavir.Hb00249
Panicum virgatum
Pavir.Hb00249
N
Pavir.Ia01481
Panicum virgatum
Pavir.Ia01481
N
Pavir.Ib03951
Panicum virgatum
Pavir.Ib03951
N
PGSC0003DMG400003231
Solanum tuberosum
PGSC0003DMG400003231
N
Pm021173
Prunus mume
Pm021173
N
PRUPE_ppa015724mg
Prunus persica
PRUPE_ppa015724mg
N
Sb01g014580
Sorghum bicolor
Sb01g014580
N
Sb08g019780
Sorghum bicolor
Sb08g019780
N
Si022813m.g
Setaria italica
Si022813m.g
N
Si024550m.g
Setaria italica
Si024550m.g
N
Si028242m.g
Setaria italica
Si028242m.g
N
Si038695m.g
Setaria italica
Si038695m.g
N
Solyc10g049720.1
Solanum lycopersicum
Solyc10g049720.1
N
Solyc10g049780.1
Solanum lycopersicum
Solyc10g049780.1
N
TRAES3BF169000100CFD_g
Triticum aestivum
TRAES3BF169000100CFD_g
N
Traes_3DL_801E89185
Triticum aestivum
Traes_3DL_801E89185
N
TRIUR3_10349
Triticum urartu
TRIUR3_10349
N