HmN_000858800 (Hymenolepis microstoma)
MADS box

TF Information

Pfam ID Interpro ID Gene ID CIS-BP ID Sequence source
PF00319 (SRF-TF) IPR002100 HmN_000858800 T259583_2.00 WormBase:ParaSite (2015-Oct-22)

Directly determined binding motifs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
No direct experiments

Motifs from related TFs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
srfA
M02283_2.00 		Dictyostelium discoideum
MYDWWWNNRD
HYNNWWWHRK		 PBM
Weirauch et al.(2014)
pTH5539 		0.708 0.708
Srf
M00178_2.00 		Mus musculus
NNDDWWHHNN
NNDDWWHHNN		 PBM
Badis et al.(2009)
Srf_3509 		0.708 0.708
SRF
M03341_2.00 		Homo sapiens
DCCWTATATGGT
ACCATATAWGGH		 SELEX
Jolma et al.(2013)
SRF_1 		0.708 0.708
SRF
M03342_2.00 		Homo sapiens
TKHCCWTATATGGKMA
TKMCCATATAWGGDMA		 SELEX
Jolma et al.(2013)
SRF_2 		0.708 0.708
SRF
M05553_2.00 		Homo sapiens
CCNTANAWGG
CCWTNTANGG		 SELEX
Yin et al.(2017)
SRF_eDBD_HT-SELEX 		0.708 0.708
SRF
M07981_2.00 		Homo sapiens
NNNWDNCCAWAWAWGGNVD
HBNCCWTWTWTGGNHWNNN		 ChIP-seq
Gerstein et al.(2012)
GM12878_SRF_HudsonAlpha 		0.708 0.708
SRF
M07982_2.00 		Homo sapiens
CCAWATAAGGNMAD
HTKNCCTTATWTGG		 ChIP-seq
Gerstein et al.(2012)
H1-hESC_SRF_HudsonAlpha 		0.708 0.708
SRF
M07983_2.00 		Homo sapiens
NNWNNCCAWAWAWGGNVD
HBNCCWTWTWTGGNNWNN		 ChIP-seq
Gerstein et al.(2012)
HepG2_SRF_HudsonAlpha 		0.708 0.708
SRF
M07984_2.00 		Homo sapiens
GNCCAWATADGGHMANN
NNTKDCCHTATWTGGNC		 ChIP-seq
Gerstein et al.(2012)
K562_SRF_HudsonAlpha 		0.708 0.708
SRF
M09249_2.00 		Homo sapiens
HNWBVCCAWAWAWGGNRR
YYNCCWTWTWTGGBVWND		 Misc
Kulakovskiy et al.(2013)
SRF_HUMAN.H11MO.0.A 		0.708 0.708
Srf
M09254_2.00 		Mus musculus
NWDVCCAWAWAWGGVMR
YKBCCWTWTWTGGBHWN		 Misc
Kulakovskiy et al.(2013)
SRF_MOUSE.H11MO.0.A 		0.708 0.708
Srf
M09598_2.00 		Mus musculus
CCWWATWWGGNH
DNCCWWATWWGG		 Misc
Heinz et al.(2010)
PUER-Srf_Sullivan_et_al. 		0.708 0.708
SRF
M10947_2.00 		Homo sapiens
MNBWCCWTATAWGGGCAT
ATGCCCWTATAWGGWVNK		 Transfac
Matys et al.(2006)
V$SRF_01 		0.708 0.708
SRF
M10948_2.00 		Homo sapiens Transfac license required
 Transfac license required
 Transfac
Matys et al.(2006)
V$SRF_02 		0.708 0.708
SRF
M10949_2.00 		Homo sapiens Transfac license required
 Transfac license required
 Transfac
Matys et al.(2006)
V$SRF_03 		0.708 0.708
SRF
M10950_2.00 		Homo sapiens Transfac license required
 Transfac license required
 Transfac
Matys et al.(2006)
V$SRF_09 		0.708 0.708
SRF
M10951_2.00 		Homo sapiens
DCCWTATAWGGVSHB
VDSBCCWTATAWGGH		 Transfac
Matys et al.(2006)
V$SRF_C 		0.708 0.708
SRF
M10952_2.00 		Homo sapiens Transfac license required
 Transfac license required
 Transfac
Matys et al.(2006)
V$SRF_Q3 		0.708 0.708
SRF
M10953_2.00 		Homo sapiens Transfac license required
 Transfac license required
 Transfac
Matys et al.(2006)
V$SRF_Q4 		0.708 0.708
SRF
M10954_2.00 		Homo sapiens Transfac license required
 Transfac license required
 Transfac
Matys et al.(2006)
V$SRF_Q5_01 		0.708 0.708
SRF
M10955_2.00 		Homo sapiens Transfac license required
 Transfac license required
 Transfac
Matys et al.(2006)
V$SRF_Q5_02 		0.708 0.708
SRF
M10956_2.00 		Homo sapiens
BNCCAWATAWGGVN
NBCCWTATWTGGNV		 Transfac
Matys et al.(2006)
V$SRF_Q6 		0.708 0.708
SRF
M05554_2.00 		Homo sapiens
CCNTAYAWGG
CCWTRTANGG		 SELEX
Yin et al.(2017)
SRF_eDBD_Methyl-HT-SELEX 		0.708 0.708
For this family, TFs with SR scores > 0.700 will likely have a similar motif

DNA Binding Domains

Protein ID Domain From To Sequence
HmN_000858800 MADS box 63 110

Links

Other MADS box family TFs
Other Hymenolepis microstoma TFs

92 Related TFs

Name Species Gene ID Motif Evidence SR
Score		 Action
ACAC_0000261401 Angiostrongylus cantonensis ACAC_0000261401 N 0.000
ACOC_0000445401 Angiostrongylus costaricensis ACOC_0000445401 N 0.000
ALUE_0000466001 Ascaris lumbricoides ALUE_0000466001 N 0.000
ANCCAN_24904 Ancylostoma caninum ANCCAN_24904 N 0.000
ANCCEY_13945 Ancylostoma ceylanicum ANCCEY_13945 N 0.000
ANCDUO_07053 Ancylostoma duodenale ANCDUO_07053 N 0.000
ASIM_0001352101 Anisakis simplex ASIM_0001352101 N 0.000
ASU_08380 Ascaris suum ASU_08380 N 0.000
Bm2359 Brugia malayi Bm2359 N 0.000
CBN20344 Caenorhabditis brenneri CBN20344 N 0.000
CBN21788 Caenorhabditis brenneri CBN21788 N 0.000
CJA09659 Caenorhabditis japonica CJA09659 N 0.000
CRE23963 Caenorhabditis remanei CRE23963 N 0.000
D917_07015 Trichinella nativa D917_07015 N 0.000
D918_05776 Trichuris suis D918_05776 N 0.000
DICVIV_02602 Dictyocaulus viviparus DICVIV_02602 N 0.000
DME_0000607201 Dracunculus medinensis DME_0000607201 N 0.000
EFV53021 Trichinella spiralis EFV53021 N 0.000
EVEC_0000439301 Enterobius vermicularis EVEC_0000439301 N 0.000
GPLIN_000035200 Globodera pallida GPLIN_000035200 N 0.000
GPUH_0001856701 Gongylonema pulchrum GPUH_0001856701 N 0.000
HCOI00027700 Haemonchus contortus HCOI00027700 N 0.000
HPLM_0001420401 Haemonchus placei HPLM_0001420401 N 0.000
L596_g21289 Steinernema carpocapsae L596_g21289 N 0.000
L889_g7644 Steinernema feltiae L889_g7644 N 0.000
L892_g27191 Steinernema scapterisci L892_g27191 N 0.000
L893_g33137 Steinernema glaseri L893_g33137 N 0.000
L898_g24378 Steinernema monticolum L898_g24378 N 0.000
LOAG_08661 Loa loa LOAG_08661 N 0.000
MhA1_Contig123.frz3.gene102 Meloidogyne hapla MhA1_Contig123.frz3.gene102 N 0.000
Minc05207 Meloidogyne incognita Minc05207 N 0.000
Minc15071 Meloidogyne incognita Minc15071 N 0.000
nAv.1.0.1.g02714 Acanthocheilonema viteae nAv.1.0.1.g02714 N 0.000
NBR_0001408501 Nippostrongylus brasiliensis NBR_0001408501 N 0.000
nDi.2.2.2.g01364 Dirofilaria immitis nDi.2.2.2.g01364 N 0.000
NECAME_01427 Necator americanus NECAME_01427 N 0.000
nLs.2.1.2.g03389 Litomosoides sigmodontis nLs.2.1.2.g03389 N 0.000
nOo.2.0.1.g07016 Onchocerca ochengi nOo.2.0.1.g07016 N 0.000
nRc.2.0.1.g11083 Romanomermis culicivorax nRc.2.0.1.g11083 N 0.000
OESDEN_00417 Oesophagostomum dentatum OESDEN_00417 N 0.000
OFLC_0000335001 Onchocerca flexuosa OFLC_0000335001 N 0.000
PTRK_0000871700 Parastrongyloides trichosuri PTRK_0000871700 N 0.000
RSKR_0000723700 Rhabditophanes kr3021 RSKR_0000723700 N 0.000
SSTP_0000565500 Strongyloides stercoralis SSTP_0000565500 N 0.000
SVE_0167700 Strongyloides venezuelensis SVE_0167700 N 0.000
TCLT_0000380801 Thelazia callipaeda TCLT_0000380801 N 0.000
TCNE_0001271001 Toxocara canis TCNE_0001271001 N 0.000
TELCIR_14024 Teladorsagia circumcincta TELCIR_14024 N 0.000
TTRE_0000251601 Trichuris trichiura TTRE_0000251601 N 0.000
aha-1 Caenorhabditis elegans WBGene00000095 N 0.000
WBGene00237491 Onchocerca volvulus WBGene00237491 N 0.000
WUBG_17914 Wuchereria bancrofti WUBG_17914 N 0.000