TTAC_0000870401 (Hydatigera taeniaeformis)
MADS box

TF Information

Pfam ID Interpro ID Gene ID CIS-BP ID Sequence source
PF00319 (SRF-TF) IPR002100 TTAC_0000870401 T259676_2.00 WormBase:ParaSite (2015-Oct-22)

Directly determined binding motifs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
No direct experiments

Motifs from related TFs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
srfA
M02283_2.00 		Dictyostelium discoideum
MYDWWWNNRD
HYNNWWWHRK		 PBM
Weirauch et al.(2014)
pTH5539 		0.708 0.708
Srf
M00178_2.00 		Mus musculus
NNDDWWHHNN
NNDDWWHHNN		 PBM
Badis et al.(2009)
Srf_3509 		0.708 0.708
SRF
M03341_2.00 		Homo sapiens
DCCWTATATGGT
ACCATATAWGGH		 SELEX
Jolma et al.(2013)
SRF_1 		0.708 0.708
SRF
M03342_2.00 		Homo sapiens
TKHCCWTATATGGKMA
TKMCCATATAWGGDMA		 SELEX
Jolma et al.(2013)
SRF_2 		0.708 0.708
SRF
M05553_2.00 		Homo sapiens
CCNTANAWGG
CCWTNTANGG		 SELEX
Yin et al.(2017)
SRF_eDBD_HT-SELEX 		0.708 0.708
SRF
M07981_2.00 		Homo sapiens
NNNWDNCCAWAWAWGGNVD
HBNCCWTWTWTGGNHWNNN		 ChIP-seq
Gerstein et al.(2012)
GM12878_SRF_HudsonAlpha 		0.708 0.708
SRF
M07982_2.00 		Homo sapiens
CCAWATAAGGNMAD
HTKNCCTTATWTGG		 ChIP-seq
Gerstein et al.(2012)
H1-hESC_SRF_HudsonAlpha 		0.708 0.708
SRF
M07983_2.00 		Homo sapiens
NNWNNCCAWAWAWGGNVD
HBNCCWTWTWTGGNNWNN		 ChIP-seq
Gerstein et al.(2012)
HepG2_SRF_HudsonAlpha 		0.708 0.708
SRF
M07984_2.00 		Homo sapiens
GNCCAWATADGGHMANN
NNTKDCCHTATWTGGNC		 ChIP-seq
Gerstein et al.(2012)
K562_SRF_HudsonAlpha 		0.708 0.708
SRF
M09249_2.00 		Homo sapiens
HNWBVCCAWAWAWGGNRR
YYNCCWTWTWTGGBVWND		 Misc
Kulakovskiy et al.(2013)
SRF_HUMAN.H11MO.0.A 		0.708 0.708
Srf
M09254_2.00 		Mus musculus
NWDVCCAWAWAWGGVMR
YKBCCWTWTWTGGBHWN		 Misc
Kulakovskiy et al.(2013)
SRF_MOUSE.H11MO.0.A 		0.708 0.708
Srf
M09598_2.00 		Mus musculus
CCWWATWWGGNH
DNCCWWATWWGG		 Misc
Heinz et al.(2010)
PUER-Srf_Sullivan_et_al. 		0.708 0.708
SRF
M10947_2.00 		Homo sapiens
MNBWCCWTATAWGGGCAT
ATGCCCWTATAWGGWVNK		 Transfac
Matys et al.(2006)
V$SRF_01 		0.708 0.708
SRF
M10948_2.00 		Homo sapiens Transfac license required
 Transfac license required
 Transfac
Matys et al.(2006)
V$SRF_02 		0.708 0.708
SRF
M10949_2.00 		Homo sapiens Transfac license required
 Transfac license required
 Transfac
Matys et al.(2006)
V$SRF_03 		0.708 0.708
SRF
M10950_2.00 		Homo sapiens Transfac license required
 Transfac license required
 Transfac
Matys et al.(2006)
V$SRF_09 		0.708 0.708
SRF
M10951_2.00 		Homo sapiens
DCCWTATAWGGVSHB
VDSBCCWTATAWGGH		 Transfac
Matys et al.(2006)
V$SRF_C 		0.708 0.708
SRF
M10952_2.00 		Homo sapiens Transfac license required
 Transfac license required
 Transfac
Matys et al.(2006)
V$SRF_Q3 		0.708 0.708
SRF
M10953_2.00 		Homo sapiens Transfac license required
 Transfac license required
 Transfac
Matys et al.(2006)
V$SRF_Q4 		0.708 0.708
SRF
M10954_2.00 		Homo sapiens Transfac license required
 Transfac license required
 Transfac
Matys et al.(2006)
V$SRF_Q5_01 		0.708 0.708
SRF
M10955_2.00 		Homo sapiens Transfac license required
 Transfac license required
 Transfac
Matys et al.(2006)
V$SRF_Q5_02 		0.708 0.708
SRF
M10956_2.00 		Homo sapiens
BNCCAWATAWGGVN
NBCCWTATWTGGNV		 Transfac
Matys et al.(2006)
V$SRF_Q6 		0.708 0.708
SRF
M05554_2.00 		Homo sapiens
CCNTAYAWGG
CCWTRTANGG		 SELEX
Yin et al.(2017)
SRF_eDBD_Methyl-HT-SELEX 		0.708 0.708
For this family, TFs with SR scores > 0.700 will likely have a similar motif

DNA Binding Domains

Protein ID Domain From To Sequence
TTAC_0000870401-mRNA-1 MADS box 61 108

Links

Other MADS box family TFs
Other Hydatigera taeniaeformis TFs

100 Related TFs

Name Species Gene ID Motif Evidence SR
Score		 Action
Aan_R007733 Calypte anna Aan_R007733 I 0.000
Afo_R009498 Aptenodytes forsteri Afo_R009498 I 0.000
Alligator_sinensis_CCG006997.1 Alligator sinensis Alligator_sinensis_CCG006997.1 I 0.000
Cmyd_10012130 Chelonia mydas Cmyd_10012130 I 0.000
ENSACAG00000010131 Anolis carolinensis ENSACAG00000010131 I 0.000
ENSAPLG00000015153 Anas platyrhynchos ENSAPLG00000015153 I 0.000
TET1 Bos taurus ENSBTAG00000037756 I 0.000
TET1 Canis familiaris ENSCAFG00000013739 I 0.000
TET1 Callithrix jacchus ENSCJAG00000019005 I 0.000
TET1 Cavia porcellus ENSCPOG00000009306 I 0.000
ENSCSAG00000007633 Chlorocebus sabaeus ENSCSAG00000007633 I 0.000
TET1 Dasypus novemcinctus ENSDNOG00000018763 I 0.000
ENSECAG00000015450 Equus caballus ENSECAG00000015450 I 0.000
TET1 Echinops telfairi ENSETEG00000015118 I 0.000
ENSFALG00000013006 Ficedula albicollis ENSFALG00000013006 I 0.000
TET1 Felis catus ENSFCAG00000012673 I 0.000
TET1 Homo sapiens ENSG00000138336 D 0.000
ENSGALG00000004073 Gallus gallus ENSGALG00000004073 I 0.000
TET1 Gorilla gorilla ENSGGOG00000011822 I 0.000
TET1 Loxodonta africana ENSLAFG00000006171 I 0.000
ENSMEUG00000007667 Macropus eugenii ENSMEUG00000007667 I 0.000
TET1 Meleagris gallopavo ENSMGAG00000004157 I 0.000
ENSMGAG00000004157_CONSTRUCT PBM CONSTRUCTS ENSMGAG00000004157_CONSTRUCT D 0.000
TET1 Macaca mulatta ENSMMUG00000023198 I 0.000
TET1 Monodelphis domestica ENSMODG00000017310 I 0.000
ENSMPUG00000012204 Mustela putorius furo ENSMPUG00000012204 I 0.000
Tet1 Mus musculus ENSMUSG00000047146 I 0.000
ENSNLEG00000011782 Nomascus leucogenys ENSNLEG00000011782 I 0.000
ENSOANG00000015049 Ornithorhynchus anatinus ENSOANG00000015049 I 0.000
ENSOARG00000005141 Ovis aries ENSOARG00000005141 I 0.000
TET1 Oryctolagus cuniculus ENSOCUG00000013277 I 0.000
TET1 Otolemur garnettii ENSOGAG00000034454 I 0.000
ENSOPRG00000005862 Ochotona princeps ENSOPRG00000005862 I 0.000
ENSP00000362748-D1 Bos grunniens ENSP00000362748-D1 I 0.000
ENSPANG00000022122 Papio anubis ENSPANG00000022122 I 0.000
TET1 Procavia capensis ENSPCAG00000007795 I 0.000
ENSPPYG00000002393 Pongo abelii ENSPPYG00000002393 I 0.000
ENSPSIG00000006159 Pelodiscus sinensis ENSPSIG00000006159 I 0.000
TET1 Pan troglodytes ENSPTRG00000002558 I 0.000
TET1 Pteropus vampyrus ENSPVAG00000003593 I 0.000
Tet1 Rattus norvegicus ENSRNOG00000000277 I 0.000
TET1 Sorex araneus ENSSARG00000011693 I 0.000
ENSSTOG00000001527 Ictidomys tridecemlineatus ENSSTOG00000001527 I 0.000
ENSTGUG00000003754 Taeniopygia guttata ENSTGUG00000003754 I 0.000
ENSTSYG00000006963 Tarsius syrichta ENSTSYG00000006963 I 0.000
TET1 Tursiops truncatus ENSTTRG00000001566 I 0.000
TET1 Vicugna pacos ENSVPAG00000011820 I 0.000
Gfo_R013982 Geospiza fortis Gfo_R013982 I 0.000
Myotis_brandtii_TET1_10018894 Myotis brandtii Myotis_brandtii_TET1_10018894 I 0.000
Ogr07249 Ophisaurus gracilis Ogr07249 I 0.000
Pvit_00547 Pogona vitticeps Pvit_00547 I 0.000
Sakowv30045758m.g Saccoglossus kowalevskii Sakowv30045758m.g I 0.000
XP_001368961.2 Monodelphis domestica XP_001368961.2 D 0.000