Bo6g018740 (Brassica oleracea)
Myb/SANT

TF Information

Pfam ID Interpro ID Gene ID CIS-BP ID Sequence source Animal TF db
PF00249 (Myb_DNA-binding) IPR014778 Bo6g018740 T267413_2.00 Ensembl (2018-Dec-8) Link out

Directly determined binding motifs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
No direct experiments

Motifs from related TFs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
TRB1
M01070_2.00 		Arabidopsis thaliana
WRMCCTAR
YTAGGKYW		 PBM
Sullivan et al.(2014)
pTH7117 		0.909 0.978
OS01G0708000
M02326_2.00 		Oryza sativa
WRMCCTAVNN
NNBTAGGKYW		 PBM
Weirauch et al.(2014)
pTH8716 		0.761 0.804
PK06103.1
M02348_2.00 		Cannabis sativa
TGCCCTAG
CTAGGGCA		 PBM
Weirauch et al.(2014)
pTH9649 		0.732 0.848
TRB2
M02314_2.00 		Arabidopsis thaliana
WRMCCTAR
YTAGGKYW		 PBM
Weirauch et al.(2014)
pTH7094 		0.731 0.804
TRB2
M01083_2.00 		Arabidopsis thaliana
HRMCCTAR
YTAGGKYD		 PBM
Sullivan et al.(2014)
pTH7260 		0.731 0.804
TRB2
M07157_2.00 		Arabidopsis thaliana
HHHHHNWWRCCCTAAWHHN
NDDWTTAGGGYWWNDDDDD		 Dap-seq
OMalley et al.(2016)
TBP3_col_a 		0.731 0.804
TRB2
M07158_2.00 		Arabidopsis thaliana
HVDHHHNWARCCCTAAHYH
DRDTTAGGGYTWNDDDHBD		 Dap-seq
OMalley et al.(2016)
TBP3_colamp_a 		0.731 0.804
AT1G72740
M07033_2.00 		Arabidopsis thaliana
HMNAAACCCTAAWYY
RRWTTAGGGTTTNKD		 Dap-seq
OMalley et al.(2016)
AT1G72740_col_a 		0.728 0.717
AT1G72740
M07034_2.00 		Arabidopsis thaliana
HNWAACCCTAAHYHNNNHNNN
NNNDNNNDRDTTAGGGTTWND		 Dap-seq
OMalley et al.(2016)
AT1G72740_colamp_a 		0.728 0.717
For this family, TFs with SR scores > 0.661 will likely have a similar motif

DNA Binding Domains

Protein ID Domain From To Sequence
Bo6g018740.1 Myb 5 56

Links

Other Myb/SANT family TFs
Other Brassica oleracea TFs

239 Related TFs

Name Species Gene ID Motif Evidence SR
Score		 Action
30068.m002661 Ricinus communis 30068.m002661 I
AMTR_s00048p00108400 Amborella trichopoda AMTR_s00048p00108400 I
AMTR_s00138p00062920 Amborella trichopoda AMTR_s00138p00062920 I
BZIP68 Arabidopsis thaliana AT1G32150 D
BGIOSGA007448 Oryza indica BGIOSGA007448 I
BGIOSGA036419 Oryza indica BGIOSGA036419 I
Bostr.3359s0141 Boechera stricta Bostr.3359s0141 I
BRADI3G02730 Brachypodium distachyon BRADI3G02730 I
BRADI4G39630 Brachypodium distachyon BRADI4G39630 I
Cagra.3359s0011 Capsella grandiflora Cagra.3359s0011 I
cassava11837.valid.m1 Manihot esculenta cassava11837.valid.m1 I
cassava37043.valid.m1 Manihot esculenta cassava37043.valid.m1 I
Ca_11455 Cicer arietinum Ca_11455 I
Ca_15839 Cicer arietinum Ca_15839 I
chr2.LjT41P23.50.nc Lotus japonicus chr2.LjT41P23.50.nc I
Ciclev10001333m.g Citrus clementina Ciclev10001333m.g I
Cla008988 Citrullus lanatus Cla008988 I
Cla016502 Citrullus lanatus Cla016502 I
Cucsa.312800 Cucumis sativus Cucsa.312800 I
Cucsa.322110 Cucumis sativus Cucsa.322110 I
Eucgr.E00223 Eucalyptus grandis Eucgr.E00223 I
evm.TU.supercontig_2741.1 Carica papaya evm.TU.supercontig_2741.1 I
F775_32205 Aegilops tauschii F775_32205 I
bZIP68 Arabidopsis lyrata fgenesh2_kg.1__3350__AT1G32150.1 I
gene13716-v1.0-hybrid Fragaria vesca gene13716-v1.0-hybrid I
GLYMA01G01740 Glycine max GLYMA01G01740 I
GLYMA08G34280 Glycine max GLYMA08G34280 I
GLYMA09G34170 Glycine max GLYMA09G34170 I
GLYMA16G15810 Glycine max GLYMA16G15810 I
Gorai.003G185700 Gossypium raimondii Gorai.003G185700 I
GRMZM2G019106 Zea mays GRMZM2G019106 I
GRMZM2G074373 Zea mays GRMZM2G074373 I
GRMZM2G088140 Zea mays GRMZM2G088140 I
GRMZM2G153144 Zea mays GRMZM2G153144 I
HBP1A_WHEAT Triticum aestivum HBP1A_WHEAT D
LjSGA_036158.1 Lotus japonicus LjSGA_036158.1 I
LPERR12G05920 Leersia perrieri LPERR12G05920 I
MDP0000185553 Malus domestica MDP0000185553 I
MDP0000286846 Malus domestica MDP0000286846 I
mgf008195m Mimulus guttatus mgf008195m I
mgf008605m Mimulus guttatus mgf008605m I
mgf013375m Mimulus guttatus mgf013375m I
MLOC_63066 Hordeum vulgare MLOC_63066 I
MTR_5g028850 Medicago truncatula MTR_5g028850 I
OB02G12150 Oryza brachyantha OB02G12150 I
OB12G16310 Oryza brachyantha OB12G16310 I
OBART12G06770 Oryza barthii OBART12G06770 I
OGLUM12G08090 Oryza glumaepatula OGLUM12G08090 I
OLONG_021967 Oryza longistaminata OLONG_021967 I
OMERI12G04560 Oryza meridionalis OMERI12G04560 I
ONIVA02G02170 Oryza nivara ONIVA02G02170 I
ONIVA12G06500 Oryza nivara ONIVA12G06500 I
OPUNC02G01690 Oryza punctata OPUNC02G01690 I
OPUNC12G06450 Oryza punctata OPUNC12G06450 I
orange1.1g036551m.g Citrus sinensis orange1.1g036551m.g I
ORGLA02G0021500 Oryza glaberrima ORGLA02G0021500 I
ORGLA12G0063500 Oryza glaberrima ORGLA12G0063500 I
ORUFI12G07600 Oryza rufipogon ORUFI12G07600 I
OS02G0128200 Oryza sativa OS02G0128200 I
Pavir.Aa03436 Panicum virgatum Pavir.Aa03436 I
Pavir.Ab00132 Panicum virgatum Pavir.Ab00132 I
Pavir.Ca00403 Panicum virgatum Pavir.Ca00403 I
Pavir.Cb01814 Panicum virgatum Pavir.Cb01814 I
PDK_20s1310372g001 Phoenix dactylifera PDK_20s1310372g001 I
PDK_20s1368181g001 Phoenix dactylifera PDK_20s1368181g001 I
PDK_20s1372692g002 Phoenix dactylifera PDK_20s1372692g002 I
PDK_20s1568831g001 Phoenix dactylifera PDK_20s1568831g001 I
PGSC0003DMG400018469 Solanum tuberosum PGSC0003DMG400018469 I
PK23964.1 Cannabis sativa PK23964.1 D
Pm023132 Prunus mume Pm023132 I
POPTR_0001s01840 Populus trichocarpa POPTR_0001s01840 I
POPTR_0003s09630 Populus trichocarpa POPTR_0003s09630 I
PRUPE_ppa006484mg Prunus persica PRUPE_ppa006484mg I
SapurV1A.0051s0250 Salix purpurea SapurV1A.0051s0250 I
SapurV1A.0063s0130 Salix purpurea SapurV1A.0063s0130 I
Sb04g002360 Sorghum bicolor Sb04g002360 I
Sb08g008300 Sorghum bicolor Sb08g008300 I
Si017637m.g Setaria italica Si017637m.g I
Si022325m.g Setaria italica Si022325m.g I
Solyc08g005290.2 Solanum lycopersicum Solyc08g005290.2 I
Solyc08g076100.2 Solanum lycopersicum Solyc08g076100.2 I
TCM_016606 Theobroma cacao TCM_016606 I
Thhalv10007879m.g Eutrema salsugineum Thhalv10007879m.g I
Traes_5AS_3A85F1C2C Triticum aestivum Traes_5AS_3A85F1C2C I
Traes_5BL_A5532B750 Triticum aestivum Traes_5BL_A5532B750 I
Traes_5BS_A5532B750 Triticum aestivum Traes_5BS_A5532B750 I
Traes_5DL_C794C1EEA Triticum aestivum Traes_5DL_C794C1EEA I
Traes_6BS_05264DAEA Triticum aestivum Traes_6BS_05264DAEA I
TRIUR3_18117 Triticum urartu TRIUR3_18117 I
TRIUR3_34165 Triticum urartu TRIUR3_34165 I
VIT_02s0012g02250 Vitis vinifera VIT_02s0012g02250 I