CIS-BP Database: Catalog of Inferred Sequence Binding Preferences
Home
Tools
View cart
Bulk downloads
Database stats
Contact us
Help
Update Log
FAQ
Links
How to cite
AT1G72740
(
Arabidopsis thaliana
)
Myb/SANT
TF Information
Pfam ID
Interpro ID
Gene ID
CIS-BP ID
Sequence source
Animal TF db
PF00249 (Myb_DNA-binding)
IPR014778
AT1G72740
T266370_2.00
Ensembl (2018-Dec-8)
Link out
Directly determined binding motifs
Name/Motif ID
Species
Forward
Reverse
Type/Study/Study ID
SR
Score
DBD
Identity
AT1G72740
M07033_2.00
Arabidopsis thaliana
HMNAAACCCTAAWYY
RRWTTAGGGTTTNKD
Dap-seq
OMalley et al.(2016)
AT1G72740_col_a
(Direct)
(Direct)
AT1G72740
M07034_2.00
Arabidopsis thaliana
HNWAACCCTAAHYHNNNHNNN
NNNDNNNDRDTTAGGGTTWND
Dap-seq
OMalley et al.(2016)
AT1G72740_colamp_a
(Direct)
(Direct)
Motifs from related TFs
Name/Motif ID
Species
Forward
Reverse
Type/Study/Study ID
SR
Score
DBD
Identity
OS01G0708000
M02326_2.00
Oryza sativa
WRMCCTAVNN
NNBTAGGKYW
PBM
Weirauch et al.(2014)
pTH8716
0.804
0.766
TRB1
M01070_2.00
Arabidopsis thaliana
WRMCCTAR
YTAGGKYW
PBM
Sullivan et al.(2014)
pTH7117
0.728
0.702
PK06103.1
M02348_2.00
Cannabis sativa
TGCCCTAG
CTAGGGCA
PBM
Weirauch et al.(2014)
pTH9649
0.673
0.723
For this family, TFs with SR scores >
0.661
will likely have a similar motif
DNA Binding Domains
Protein ID
Domain
From
To
Sequence
AT1G72740.1
Myb
5
57
KLKWTAEEEEALLAGIRKHGPGKWKNILRDPEFADQLIHRSNIDLKDKWRNLS
AT1G72740.2
Myb
5
57
KLKWTAEEEEALLAGIRKHGPGKWKNILRDPEFADQLIHRSNIDLKDKWRNLS
Links
Other
Myb/SANT
family TFs
Other
Arabidopsis thaliana
TFs
194 Related TFs
Name
Species
Gene ID
Motif Evidence
SR
Score
Action
Gorai.009G143000
Gossypium raimondii
Gorai.009G143000
I
0.901
AT1G17520
Arabidopsis thaliana
AT1G17520
I
0.876
scaffold_101953.1
Arabidopsis lyrata
scaffold_101953.1
I
0.876
Cagra.0824s0121
Capsella grandiflora
Cagra.0824s0121
I
0.876
fgenesh2_kg.2__1540__AT1G72740.1
Arabidopsis lyrata
fgenesh2_kg.2__1540__AT1G72740.1
I
0.875
Cagra.1013s0027
Capsella grandiflora
Cagra.1013s0027
I
0.875
Carubv10020636m.g
Capsella rubella
Carubv10020636m.g
I
0.875
Bo8g067280
Brassica oleracea
Bo8g067280
I
0.842
Bra016598
Brassica rapa
Bra016598
I
0.842
TCM_029078
Theobroma cacao
TCM_029078
I
0.840
Bo6g116150
Brassica oleracea
Bo6g116150
I
0.837
Bra016037
Brassica rapa
Bra016037
I
0.837
Carubv10009890m.g
Capsella rubella
Carubv10009890m.g
I
0.837
Ciclev10026245m.g
Citrus clementina
Ciclev10026245m.g
I
0.837
orange1.1g023740m.g
Citrus sinensis
orange1.1g023740m.g
I
0.837
Thhalv10008387m.g
Eutrema salsugineum
Thhalv10008387m.g
I
0.837
Bo8g104830
Brassica oleracea
Bo8g104830
I
0.832
PRUPE_ppa016498mg
Prunus persica
PRUPE_ppa016498mg
I
0.830
Pm013309
Prunus mume
Pm013309
I
0.830
29706.m001328
Ricinus communis
29706.m001328
I
0.828
cassava34930.m1
Manihot esculenta
cassava34930.m1
I
0.828
evm.TU.supercontig_106.31
Carica papaya
evm.TU.supercontig_106.31
I
0.828
Bostr.7128s0363
Boechera stricta
Bostr.7128s0363
I
0.827
Bo5g023860
Brassica oleracea
Bo5g023860
I
0.824
Bra025967
Brassica rapa
Bra025967
I
0.824
Bostr.10273s0077
Boechera stricta
Bostr.10273s0077
I
0.824
Bo3g184590
Brassica oleracea
Bo3g184590
I
0.815
Bra030894
Brassica rapa
Bra030894
I
0.815
Thhalv10018950m.g
Eutrema salsugineum
Thhalv10018950m.g
I
0.808
BGIOSGA004300
Oryza indica
BGIOSGA004300
I
0.804
OB01G37330
Oryza brachyantha
OB01G37330
I
0.804
OBART01G28260
Oryza barthii
OBART01G28260
I
0.804
OGLUM01G32190
Oryza glumaepatula
OGLUM01G32190
I
0.804
OLONG_008666
Oryza longistaminata
OLONG_008666
I
0.804
OMERI05G07460
Oryza meridionalis
OMERI05G07460
I
0.804
ONIVA01G32190
Oryza nivara
ONIVA01G32190
I
0.804
OPUNC01G28080
Oryza punctata
OPUNC01G28080
I
0.804
ORGLA01G0233700
Oryza glaberrima
ORGLA01G0233700
I
0.804
ORUFI01G31370
Oryza rufipogon
ORUFI01G31370
I
0.804
OS01G0708000
Oryza sativa
OS01G0708000
D
0.804
Bra030992
Brassica rapa
Bra030992
I
0.803
Cla012798
Citrullus lanatus
Cla012798
I
0.788
Cucsa.341020
Cucumis sativus
Cucsa.341020
I
0.788
GLYMA07G00930
Glycine max
GLYMA07G00930
I
0.770
GLYMA08G20270
Glycine max
GLYMA08G20270
I
0.770
Eucgr.J02841
Eucalyptus grandis
Eucgr.J02841
I
0.766
Cagra.1262s0035
Capsella grandiflora
Cagra.1262s0035
I
0.757
Carubv10009763m.g
Capsella rubella
Carubv10009763m.g
I
0.757
Lus10027621.g
Linum usitatissimum
Lus10027621.g
I
0.757
Lus10030935.g
Linum usitatissimum
Lus10030935.g
I
0.757
Lus10040111.g
Linum usitatissimum
Lus10040111.g
I
0.757
PGSC0003DMG400023131
Solanum tuberosum
PGSC0003DMG400023131
I
0.750
Solyc11g044320.1
Solanum lycopersicum
Solyc11g044320.1
I
0.750
SELMODRAFT_49296
Selaginella moellendorffii
SELMODRAFT_49296
I
0.748
SELMODRAFT_49297
Selaginella moellendorffii
SELMODRAFT_49297
I
0.748
evm.TU.supercontig_25.81
Carica papaya
evm.TU.supercontig_25.81
I
0.746
Ciclev10009173m.g
Citrus clementina
Ciclev10009173m.g
I
0.743
orange1.1g024128m.g
Citrus sinensis
orange1.1g024128m.g
I
0.743
chr2.LjT13P17.300.nd
Lotus japonicus
chr2.LjT13P17.300.nd
I
0.742
LjSGA_029815.1
Lotus japonicus
LjSGA_029815.1
I
0.742
29912.m005376
Ricinus communis
29912.m005376
I
0.735
chr3.LjT02L14.30.nd
Lotus japonicus
chr3.LjT02L14.30.nd
I
0.734
LjSGA_016825.2
Lotus japonicus
LjSGA_016825.2
I
0.734
POPTR_0018s07040
Populus trichocarpa
POPTR_0018s07040
I
0.731
TRB1
Arabidopsis thaliana
AT1G49950
D
0.728
Bo6g018740
Brassica oleracea
Bo6g018740
I
0.728
Bra018818
Brassica rapa
Bra018818
I
0.728
TRB1
Arabidopsis lyrata
fgenesh2_kg.1__4077__AT1G49950.2
I
0.728
PGSC0003DMG401025742
Solanum tuberosum
PGSC0003DMG401025742
I
0.728
Bostr.26675s0174
Boechera stricta
Bostr.26675s0174
I
0.728
Cagra.2826s0004
Capsella grandiflora
Cagra.2826s0004
I
0.728
Carubv10009836m.g
Capsella rubella
Carubv10009836m.g
I
0.728
Thhalv10011686m.g
Eutrema salsugineum
Thhalv10011686m.g
I
0.728
GSMUA_Achr4G08670_001
Musa acuminata
GSMUA_Achr4G08670_001
I
0.722
GSMUA_Achr4G09130_001
Musa acuminata
GSMUA_Achr4G09130_001
I
0.722
GSMUA_Achr8G24960_001
Musa acuminata
GSMUA_Achr8G24960_001
I
0.722
TCM_042744
Theobroma cacao
TCM_042744
I
0.721
Thhalv10012087m.g
Eutrema salsugineum
Thhalv10012087m.g
I
0.720
GSMUA_Achr2G13040_001
Musa acuminata
GSMUA_Achr2G13040_001
I
0.718
OSTLU_27049
Ostreococcus lucimarinus
OSTLU_27049
I
0.718
Aquca_001_00028
Aquilegia coerulea
Aquca_001_00028
I
0.717
Solyc07g040920.2
Solanum lycopersicum
Solyc07g040920.2
I
0.716
BRADI2G47820
Brachypodium distachyon
BRADI2G47820
I
0.715
LPERR01G24270
Leersia perrieri
LPERR01G24270
I
0.715
Si002467m.g
Setaria italica
Si002467m.g
I
0.715
Traes_3AL_12B53AB09
Triticum aestivum
Traes_3AL_12B53AB09
I
0.715
TRAES3BF075800120CFD_g
Triticum aestivum
TRAES3BF075800120CFD_g
I
0.715
Pavir.Ea02570
Panicum virgatum
Pavir.Ea02570
I
0.715
MTR_2g099610
Medicago truncatula
MTR_2g099610
I
0.713
mgf007122m
Mimulus guttatus
mgf007122m
I
0.711
POPTR_0006s14940
Populus trichocarpa
POPTR_0006s14940
I
0.709
Eucgr.C00865
Eucalyptus grandis
Eucgr.C00865
I
0.709
SapurV1A.0087s0150
Salix purpurea
SapurV1A.0087s0150
I
0.709
SapurV1A.0108s0150
Salix purpurea
SapurV1A.0108s0150
I
0.709
PK00568.1
Cannabis sativa
PK00568.1
I
0.709
MTR_8g018410
Medicago truncatula
MTR_8g018410
I
0.704
Ca_02722
Cicer arietinum
Ca_02722
I
0.703
gw1.1.287.1
Physcomitrella patens
gw1.1.287.1
I
0.703
gw1.176.27.1
Physcomitrella patens
gw1.176.27.1
I
0.703
PRUPE_ppa007796mg
Prunus persica
PRUPE_ppa007796mg
I
0.701
VIT_11s0016g01890
Vitis vinifera
VIT_11s0016g01890
I
0.701
Pm027209
Prunus mume
Pm027209
I
0.701
cassava43824.valid.m1
Manihot esculenta
cassava43824.valid.m1
I
0.701
gene12682-v1.0-hybrid
Fragaria vesca
gene12682-v1.0-hybrid
I
0.701
MDP0000265359
Malus domestica
MDP0000265359
I
0.701
GLYMA09G03390
Glycine max
GLYMA09G03390
I
0.700
GLYMA15G14320
Glycine max
GLYMA15G14320
I
0.700
GSMUA_Achr6G30000_001
Musa acuminata
GSMUA_Achr6G30000_001
I
0.700
GSMUA_Achr6G31260_001
Musa acuminata
GSMUA_Achr6G31260_001
I
0.700
gene25445-v1.0-hybrid
Fragaria vesca
gene25445-v1.0-hybrid
I
0.700
GRMZM2G108424
Zea mays
GRMZM2G108424
I
0.697
Sb03g032530
Sorghum bicolor
Sb03g032530
I
0.697
Pavir.Eb02802
Panicum virgatum
Pavir.Eb02802
I
0.697
BRADI4G01770
Brachypodium distachyon
BRADI4G01770
I
0.695
MLOC_10278
Hordeum vulgare
MLOC_10278
I
0.695
Traes_5AS_8756ECB5A
Triticum aestivum
Traes_5AS_8756ECB5A
I
0.695
Traes_5BS_EB206B8BC
Triticum aestivum
Traes_5BS_EB206B8BC
I
0.695
Traes_5DS_3EE830A43
Triticum aestivum
Traes_5DS_3EE830A43
I
0.695
TRIUR3_10613
Triticum urartu
TRIUR3_10613
I
0.695
BRADI2G42240
Brachypodium distachyon
BRADI2G42240
I
0.693
Si002403m.g
Setaria italica
Si002403m.g
I
0.693
Ca_10058
Cicer arietinum
Ca_10058
I
0.693
gene07496-v1.0-hybrid
Fragaria vesca
gene07496-v1.0-hybrid
I
0.693
Pavir.Ea02064
Panicum virgatum
Pavir.Ea02064
I
0.693
Pavir.J27218
Panicum virgatum
Pavir.J27218
I
0.693
AMTR_s00007p00193000
Amborella trichopoda
AMTR_s00007p00193000
I
0.689
Bo5g077530
Brassica oleracea
Bo5g077530
I
0.689
Bra039650
Brassica rapa
Bra039650
I
0.689
mgf009594m
Mimulus guttatus
mgf009594m
I
0.689
PDK_20s1888511g002
Phoenix dactylifera
PDK_20s1888511g002
I
0.688
GRMZM2G087817
Zea mays
GRMZM2G087817
I
0.683
GRMZM2G136887
Zea mays
GRMZM2G136887
I
0.683
Sb03g026470
Sorghum bicolor
Sb03g026470
I
0.683
Traes_3AL_CF481F6AC
Triticum aestivum
Traes_3AL_CF481F6AC
I
0.683
TRAES3BF118300070CFD_g
Triticum aestivum
TRAES3BF118300070CFD_g
I
0.683
TRIUR3_08672
Triticum urartu
TRIUR3_08672
I
0.683
mgf011386m
Mimulus guttatus
mgf011386m
I
0.683
BGIOSGA003871
Oryza indica
BGIOSGA003871
I
0.677
LPERR01G18090
Leersia perrieri
LPERR01G18090
I
0.677
OBART01G21150
Oryza barthii
OBART01G21150
I
0.677
OLONG_011068
Oryza longistaminata
OLONG_011068
I
0.677
OMERI01G19490
Oryza meridionalis
OMERI01G19490
I
0.677
OMERI01G19510
Oryza meridionalis
OMERI01G19510
I
0.677
ONIVA01G23780
Oryza nivara
ONIVA01G23780
I
0.677
OPUNC01G21220
Oryza punctata
OPUNC01G21220
I
0.677
ORGLA01G0168300
Oryza glaberrima
ORGLA01G0168300
I
0.677
ORUFI01G23880
Oryza rufipogon
ORUFI01G23880
I
0.677
OS01G0589300
Oryza sativa
OS01G0589300
I
0.677
Thhalv10011866m.g
Eutrema salsugineum
Thhalv10011866m.g
I
0.677
EuGene.1300010252
Ostreococcus RCC809
EuGene.1300010252
I
0.676
TCM_037620
Theobroma cacao
TCM_037620
I
0.675
Gorai.001G013000
Gossypium raimondii
Gorai.001G013000
I
0.675
GLYMA01G40220
Glycine max
GLYMA01G40220
I
0.673
GLYMA05G22500
Glycine max
GLYMA05G22500
I
0.673
GLYMA11G05070
Glycine max
GLYMA11G05070
I
0.673
GLYMA17G17370
Glycine max
GLYMA17G17370
I
0.673
MTR_4g097130
Medicago truncatula
MTR_4g097130
I
0.673
POPTR_0001s30000
Populus trichocarpa
POPTR_0001s30000
I
0.673
POPTR_0009s09020
Populus trichocarpa
POPTR_0009s09020
I
0.673
PRUPE_ppa009220mg
Prunus persica
PRUPE_ppa009220mg
I
0.673
PRUPE_ppa011492mg
Prunus persica
PRUPE_ppa011492mg
I
0.673
TCM_000807
Theobroma cacao
TCM_000807
I
0.673
Ca_02232
Cicer arietinum
Ca_02232
I
0.673
Ca_09355
Cicer arietinum
Ca_09355
I
0.673
Cla014248
Citrullus lanatus
Cla014248
I
0.673
Pm002374
Prunus mume
Pm002374
I
0.673
Pm021139
Prunus mume
Pm021139
I
0.673
29661.m000926
Ricinus communis
29661.m000926
I
0.673
29812.m000204
Ricinus communis
29812.m000204
I
0.673
cassava19326.valid.m1
Manihot esculenta
cassava19326.valid.m1
I
0.673
cassava7508.valid.m1
Manihot esculenta
cassava7508.valid.m1
I
0.673
Cucsa.103240
Cucumis sativus
Cucsa.103240
I
0.673
Bostr.7128s0053
Boechera stricta
Bostr.7128s0053
I
0.673
Ciclev10026089m.g
Citrus clementina
Ciclev10026089m.g
I
0.673
Eucgr.I01053
Eucalyptus grandis
Eucgr.I01053
I
0.673
Gorai.003G030800
Gossypium raimondii
Gorai.003G030800
I
0.673
Gorai.007G224200
Gossypium raimondii
Gorai.007G224200
I
0.673
Lus10014653.g
Linum usitatissimum
Lus10014653.g
I
0.673
Lus10033775.g
Linum usitatissimum
Lus10033775.g
I
0.673
MDP0000239354
Malus domestica
MDP0000239354
I
0.673
orange1.1g020653m.g
Citrus sinensis
orange1.1g020653m.g
I
0.673
SapurV1A.0005s0260
Salix purpurea
SapurV1A.0005s0260
I
0.673
SapurV1A.0019s0460
Salix purpurea
SapurV1A.0019s0460
I
0.673
PK06103.1
Cannabis sativa
PK06103.1
D
0.673
LjT25P15.150.nd
Lotus japonicus
LjT25P15.150.nd
I
0.673
PDK_20s1413011g001
Phoenix dactylifera
PDK_20s1413011g001
I
0.673
PDK_20s1467521g002
Phoenix dactylifera
PDK_20s1467521g002
I
0.673
EuGene.0000030935
Micromonas pusilla
EuGene.0000030935
I
0.669
mgf000125m
Mimulus guttatus
mgf000125m
I
0.667
mgf010975m
Mimulus guttatus
mgf010975m
I
0.667
MTR_2g031870
Medicago truncatula
MTR_2g031870
I
0.666
Ca_08043
Cicer arietinum
Ca_08043
I
0.666
Eucgr.H02312
Eucalyptus grandis
Eucgr.H02312
I
0.663