CIS-BP Database: Catalog of Inferred Sequence Binding Preferences
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AMTR_s00007p00193000
(
Amborella trichopoda
)
Myb/SANT
TF Information
Pfam ID
Interpro ID
Gene ID
CIS-BP ID
Sequence source
Animal TF db
PF00249 (Myb_DNA-binding)
IPR014778
AMTR_s00007p00193000
T266140_2.00
Ensembl (2018-Dec-8)
Link out
Directly determined binding motifs
Name/Motif ID
Species
Forward
Reverse
Type/Study/Study ID
SR
Score
DBD
Identity
No direct experiments
Motifs from related TFs
Name/Motif ID
Species
Forward
Reverse
Type/Study/Study ID
SR
Score
DBD
Identity
TRB1
M01070_2.00
Arabidopsis thaliana
WRMCCTAR
YTAGGKYW
PBM
Sullivan et al.(2014)
pTH7117
0.811
0.848
OS01G0708000
M02326_2.00
Oryza sativa
WRMCCTAVNN
NNBTAGGKYW
PBM
Weirauch et al.(2014)
pTH8716
0.762
0.804
PK06103.1
M02348_2.00
Cannabis sativa
TGCCCTAG
CTAGGGCA
PBM
Weirauch et al.(2014)
pTH9649
0.705
0.826
TRB2
M02314_2.00
Arabidopsis thaliana
WRMCCTAR
YTAGGKYW
PBM
Weirauch et al.(2014)
pTH7094
0.704
0.783
TRB2
M01083_2.00
Arabidopsis thaliana
HRMCCTAR
YTAGGKYD
PBM
Sullivan et al.(2014)
pTH7260
0.704
0.783
TRB2
M07157_2.00
Arabidopsis thaliana
HHHHHNWWRCCCTAAWHHN
NDDWTTAGGGYWWNDDDDD
Dap-seq
OMalley et al.(2016)
TBP3_col_a
0.704
0.783
TRB2
M07158_2.00
Arabidopsis thaliana
HVDHHHNWARCCCTAAHYH
DRDTTAGGGYTWNDDDHBD
Dap-seq
OMalley et al.(2016)
TBP3_colamp_a
0.704
0.783
AT1G72740
M07033_2.00
Arabidopsis thaliana
HMNAAACCCTAAWYY
RRWTTAGGGTTTNKD
Dap-seq
OMalley et al.(2016)
AT1G72740_col_a
0.689
0.696
AT1G72740
M07034_2.00
Arabidopsis thaliana
HNWAACCCTAAHYHNNNHNNN
NNNDNNNDRDTTAGGGTTWND
Dap-seq
OMalley et al.(2016)
AT1G72740_colamp_a
0.689
0.696
For this family, TFs with SR scores >
0.661
will likely have a similar motif
DNA Binding Domains
Protein ID
Domain
From
To
Sequence
ERN05352
Myb
35
86
KQKWTSEEEAALRAGVDKYGPGKWRTILKDPVFSVILALRSNVDLKDKWRNM
Links
Other
Myb/SANT
family TFs
Other
Amborella trichopoda
TFs
228 Related TFs
Name
Species
Gene ID
Motif Evidence
SR
Score
Action
mgf009594m
Mimulus guttatus
mgf009594m
I
0.829
Solyc01g106940.2
Solanum lycopersicum
Solyc01g106940.2
I
0.826
PGSC0003DMG400023131
Solanum tuberosum
PGSC0003DMG400023131
I
0.822
Solyc11g044320.1
Solanum lycopersicum
Solyc11g044320.1
I
0.822
PGSC0003DMG401025742
Solanum tuberosum
PGSC0003DMG401025742
I
0.818
Bo5g077530
Brassica oleracea
Bo5g077530
I
0.817
Bra039650
Brassica rapa
Bra039650
I
0.817
TRB1
Arabidopsis thaliana
AT1G49950
D
0.811
Bo6g018740
Brassica oleracea
Bo6g018740
I
0.811
Bra018818
Brassica rapa
Bra018818
I
0.811
TRB1
Arabidopsis lyrata
fgenesh2_kg.1__4077__AT1G49950.2
I
0.811
EuGene.0000030935
Micromonas pusilla
EuGene.0000030935
I
0.811
Bostr.26675s0174
Boechera stricta
Bostr.26675s0174
I
0.811
Cagra.2826s0004
Capsella grandiflora
Cagra.2826s0004
I
0.811
Carubv10009836m.g
Capsella rubella
Carubv10009836m.g
I
0.811
Thhalv10011686m.g
Eutrema salsugineum
Thhalv10011686m.g
I
0.811
EuGene.1300010252
Ostreococcus RCC809
EuGene.1300010252
I
0.810
GSMUA_Achr2G13040_001
Musa acuminata
GSMUA_Achr2G13040_001
I
0.808
gw1.1.287.1
Physcomitrella patens
gw1.1.287.1
I
0.804
gw1.176.27.1
Physcomitrella patens
gw1.176.27.1
I
0.804
BRADI2G42240
Brachypodium distachyon
BRADI2G42240
I
0.797
Traes_3AL_CF481F6AC
Triticum aestivum
Traes_3AL_CF481F6AC
I
0.787
TRAES3BF118300070CFD_g
Triticum aestivum
TRAES3BF118300070CFD_g
I
0.787
TRIUR3_08672
Triticum urartu
TRIUR3_08672
I
0.787
OSTLU_27049
Ostreococcus lucimarinus
OSTLU_27049
I
0.776
Cla006547
Citrullus lanatus
Cla006547
I
0.774
Cucsa.298390
Cucumis sativus
Cucsa.298390
I
0.774
Aquca_004_00181
Aquilegia coerulea
Aquca_004_00181
I
0.774
evm.TU.supercontig_25.81
Carica papaya
evm.TU.supercontig_25.81
I
0.766
Si002403m.g
Setaria italica
Si002403m.g
I
0.763
Pavir.Ea02064
Panicum virgatum
Pavir.Ea02064
I
0.763
Pavir.J27218
Panicum virgatum
Pavir.J27218
I
0.763
BGIOSGA004300
Oryza indica
BGIOSGA004300
I
0.762
OB01G37330
Oryza brachyantha
OB01G37330
I
0.762
OBART01G28260
Oryza barthii
OBART01G28260
I
0.762
OGLUM01G32190
Oryza glumaepatula
OGLUM01G32190
I
0.762
OLONG_008666
Oryza longistaminata
OLONG_008666
I
0.762
OMERI05G07460
Oryza meridionalis
OMERI05G07460
I
0.762
ONIVA01G32190
Oryza nivara
ONIVA01G32190
I
0.762
OPUNC01G28080
Oryza punctata
OPUNC01G28080
I
0.762
ORGLA01G0233700
Oryza glaberrima
ORGLA01G0233700
I
0.762
ORUFI01G31370
Oryza rufipogon
ORUFI01G31370
I
0.762
OS01G0708000
Oryza sativa
OS01G0708000
D
0.762
SELMODRAFT_49296
Selaginella moellendorffii
SELMODRAFT_49296
I
0.760
SELMODRAFT_49297
Selaginella moellendorffii
SELMODRAFT_49297
I
0.760
GRMZM2G087817
Zea mays
GRMZM2G087817
I
0.753
GRMZM2G136887
Zea mays
GRMZM2G136887
I
0.753
Sb03g026470
Sorghum bicolor
Sb03g026470
I
0.753
Cla012798
Citrullus lanatus
Cla012798
I
0.752
Cucsa.341020
Cucumis sativus
Cucsa.341020
I
0.752
Ca_08043
Cicer arietinum
Ca_08043
I
0.747
MTR_8g494240
Medicago truncatula
MTR_8g494240
I
0.746
VIT_00s1311g00020
Vitis vinifera
VIT_00s1311g00020
I
0.746
VIT_07s0151g00480
Vitis vinifera
VIT_07s0151g00480
I
0.746
PDK_20s1413011g001
Phoenix dactylifera
PDK_20s1413011g001
I
0.746
AMTR_s00036p00166880
Amborella trichopoda
AMTR_s00036p00166880
I
0.741
POPTR_0009s09020
Populus trichocarpa
POPTR_0009s09020
I
0.740
TCM_007242
Theobroma cacao
TCM_007242
I
0.740
TRB1
Vitis vinifera
VIT_03s0091g01030
I
0.740
29812.m000204
Ricinus communis
29812.m000204
I
0.740
Ciclev10028926m.g
Citrus clementina
Ciclev10028926m.g
I
0.740
Eucgr.I01053
Eucalyptus grandis
Eucgr.I01053
I
0.740
Gorai.005G230800
Gossypium raimondii
Gorai.005G230800
I
0.740
Lus10014653.g
Linum usitatissimum
Lus10014653.g
I
0.740
Lus10033775.g
Linum usitatissimum
Lus10033775.g
I
0.740
orange1.1g022048m.g
Citrus sinensis
orange1.1g022048m.g
I
0.740
SapurV1A.0019s0460
Salix purpurea
SapurV1A.0019s0460
I
0.740
PK19870.1
Cannabis sativa
PK19870.1
I
0.740
POPTR_0007s14920
Populus trichocarpa
POPTR_0007s14920
I
0.739
TRB3
Arabidopsis thaliana
AT3G49850
I
0.735
POPTR_0001s30000
Populus trichocarpa
POPTR_0001s30000
I
0.733
SapurV1A.0005s0260
Salix purpurea
SapurV1A.0005s0260
I
0.733
PDK_20s1467521g002
Phoenix dactylifera
PDK_20s1467521g002
I
0.733
Bo1g081300
Brassica oleracea
Bo1g081300
I
0.730
Bra029978
Brassica rapa
Bra029978
I
0.730
PRUPE_ppa011492mg
Prunus persica
PRUPE_ppa011492mg
I
0.729
Pm021139
Prunus mume
Pm021139
I
0.729
cassava19326.valid.m1
Manihot esculenta
cassava19326.valid.m1
I
0.729
EuGene.0500010080
Micromonas sp RCC299
EuGene.0500010080
I
0.726
MTR_0095s0040
Medicago truncatula
MTR_0095s0040
I
0.725
PGSC0003DMG402003328
Solanum tuberosum
PGSC0003DMG402003328
I
0.722
Solyc02g064630.2
Solanum lycopersicum
Solyc02g064630.2
I
0.722
Bo5g023860
Brassica oleracea
Bo5g023860
I
0.721
Bra025967
Brassica rapa
Bra025967
I
0.721
MDP0000234807
Malus domestica
MDP0000234807
I
0.721
gene07496-v1.0-hybrid
Fragaria vesca
gene07496-v1.0-hybrid
I
0.720
GLYMA07G00930
Glycine max
GLYMA07G00930
I
0.718
GLYMA08G20270
Glycine max
GLYMA08G20270
I
0.718
TCM_029078
Theobroma cacao
TCM_029078
I
0.718
29706.m001328
Ricinus communis
29706.m001328
I
0.718
cassava34930.m1
Manihot esculenta
cassava34930.m1
I
0.718
evm.TU.supercontig_106.31
Carica papaya
evm.TU.supercontig_106.31
I
0.718
Bo6g116150
Brassica oleracea
Bo6g116150
I
0.715
Bra016037
Brassica rapa
Bra016037
I
0.715
Bo3g096520
Brassica oleracea
Bo3g096520
I
0.714
Bo9g019040
Brassica oleracea
Bo9g019040
I
0.714
Bra024438
Brassica rapa
Bra024438
I
0.714
Bra037837
Brassica rapa
Bra037837
I
0.714
Bra037839
Brassica rapa
Bra037839
I
0.714
Bostr.0568s0184
Boechera stricta
Bostr.0568s0184
I
0.714
Cagra.0342s0046
Capsella grandiflora
Cagra.0342s0046
I
0.714
Carubv10026874m.g
Capsella rubella
Carubv10026874m.g
I
0.714
Thhalv10004691m.g
Eutrema salsugineum
Thhalv10004691m.g
I
0.714
gene25445-v1.0-hybrid
Fragaria vesca
gene25445-v1.0-hybrid
I
0.713
AT1G17520
Arabidopsis thaliana
AT1G17520
I
0.710
Bo8g067280
Brassica oleracea
Bo8g067280
I
0.710
Bra016598
Brassica rapa
Bra016598
I
0.710
scaffold_101953.1
Arabidopsis lyrata
scaffold_101953.1
I
0.710
Cagra.0824s0121
Capsella grandiflora
Cagra.0824s0121
I
0.710
Carubv10009890m.g
Capsella rubella
Carubv10009890m.g
I
0.710
Ciclev10026245m.g
Citrus clementina
Ciclev10026245m.g
I
0.710
orange1.1g023740m.g
Citrus sinensis
orange1.1g023740m.g
I
0.710
Thhalv10008387m.g
Eutrema salsugineum
Thhalv10008387m.g
I
0.710
Bra030992
Brassica rapa
Bra030992
I
0.708
SELMODRAFT_443975
Selaginella moellendorffii
SELMODRAFT_443975
I
0.708
SELMODRAFT_49312
Selaginella moellendorffii
SELMODRAFT_49312
I
0.708
POPTR_0014s01010
Populus trichocarpa
POPTR_0014s01010
I
0.705
PRUPE_ppa009220mg
Prunus persica
PRUPE_ppa009220mg
I
0.705
Pm002374
Prunus mume
Pm002374
I
0.705
29661.m000926
Ricinus communis
29661.m000926
I
0.705
cassava7508.valid.m1
Manihot esculenta
cassava7508.valid.m1
I
0.705
MDP0000239354
Malus domestica
MDP0000239354
I
0.705
SapurV1A.0235s0100
Salix purpurea
SapurV1A.0235s0100
I
0.705
SapurV1A.1368s0050
Salix purpurea
SapurV1A.1368s0050
I
0.705
PK06103.1
Cannabis sativa
PK06103.1
D
0.705
TRB2
Arabidopsis thaliana
AT5G67580
D
0.704
TRB2
Arabidopsis lyrata
fgenesh1_pm.C_scaffold_8002157
I
0.704
GSMUA_Achr6G30000_001
Musa acuminata
GSMUA_Achr6G30000_001
I
0.701
MTR_1g041765
Medicago truncatula
MTR_1g041765
I
0.701
mgf000125m
Mimulus guttatus
mgf000125m
I
0.701
mgf010975m
Mimulus guttatus
mgf010975m
I
0.701
Bostr.7128s0363
Boechera stricta
Bostr.7128s0363
I
0.701
Bo8g104830
Brassica oleracea
Bo8g104830
I
0.700
SELMODRAFT_413266
Selaginella moellendorffii
SELMODRAFT_413266
I
0.697
SELMODRAFT_426759
Selaginella moellendorffii
SELMODRAFT_426759
I
0.697
Gorai.009G143000
Gossypium raimondii
Gorai.009G143000
I
0.697
TRB3
Arabidopsis lyrata
fgenesh2_kg.5__1337__AT3G49850.1
I
0.695
GLYMA09G03390
Glycine max
GLYMA09G03390
I
0.695
GLYMA15G14320
Glycine max
GLYMA15G14320
I
0.695
GSMUA_Achr6G31260_001
Musa acuminata
GSMUA_Achr6G31260_001
I
0.695
MTR_2g031870
Medicago truncatula
MTR_2g031870
I
0.695
Bostr.6864s0256
Boechera stricta
Bostr.6864s0256
I
0.695
Cagra.4491s0006
Capsella grandiflora
Cagra.4491s0006
I
0.695
Carubv10017722m.g
Capsella rubella
Carubv10017722m.g
I
0.695
gene05764-v1.0-hybrid
Fragaria vesca
gene05764-v1.0-hybrid
I
0.695
Thhalv10010562m.g
Eutrema salsugineum
Thhalv10010562m.g
I
0.695
GLYMA01G40220
Glycine max
GLYMA01G40220
I
0.693
GLYMA05G22500
Glycine max
GLYMA05G22500
I
0.693
GLYMA11G05070
Glycine max
GLYMA11G05070
I
0.693
GLYMA17G17370
Glycine max
GLYMA17G17370
I
0.693
MTR_4g097130
Medicago truncatula
MTR_4g097130
I
0.693
MTR_5g015340
Medicago truncatula
MTR_5g015340
I
0.693
TCM_000807
Theobroma cacao
TCM_000807
I
0.693
Ca_02232
Cicer arietinum
Ca_02232
I
0.693
Ca_09355
Cicer arietinum
Ca_09355
I
0.693
Cla014248
Citrullus lanatus
Cla014248
I
0.693
cassava37744.valid.m1
Manihot esculenta
cassava37744.valid.m1
I
0.693
Cucsa.103240
Cucumis sativus
Cucsa.103240
I
0.693
Ciclev10026089m.g
Citrus clementina
Ciclev10026089m.g
I
0.693
Gorai.003G030800
Gossypium raimondii
Gorai.003G030800
I
0.693
Gorai.007G224200
Gossypium raimondii
Gorai.007G224200
I
0.693
orange1.1g020653m.g
Citrus sinensis
orange1.1g020653m.g
I
0.693
LjT25P15.150.nd
Lotus japonicus
LjT25P15.150.nd
I
0.693
Aquca_060_00026
Aquilegia coerulea
Aquca_060_00026
I
0.691
AT1G72740
Arabidopsis thaliana
AT1G72740
D
0.689
fgenesh2_kg.2__1540__AT1G72740.1
Arabidopsis lyrata
fgenesh2_kg.2__1540__AT1G72740.1
I
0.689
Bostr.10273s0077
Boechera stricta
Bostr.10273s0077
I
0.689
Cagra.1013s0027
Capsella grandiflora
Cagra.1013s0027
I
0.689
Carubv10020636m.g
Capsella rubella
Carubv10020636m.g
I
0.689
BRADI4G01770
Brachypodium distachyon
BRADI4G01770
I
0.687
MLOC_10278
Hordeum vulgare
MLOC_10278
I
0.687
Traes_5AS_8756ECB5A
Triticum aestivum
Traes_5AS_8756ECB5A
I
0.687
Traes_5BS_EB206B8BC
Triticum aestivum
Traes_5BS_EB206B8BC
I
0.687
Traes_5DS_3EE830A43
Triticum aestivum
Traes_5DS_3EE830A43
I
0.687
TRIUR3_10613
Triticum urartu
TRIUR3_10613
I
0.687
VIT_11s0016g01890
Vitis vinifera
VIT_11s0016g01890
I
0.687
gene12682-v1.0-hybrid
Fragaria vesca
gene12682-v1.0-hybrid
I
0.687
Lus10011546.g
Linum usitatissimum
Lus10011546.g
I
0.687
Lus10019260.g
Linum usitatissimum
Lus10019260.g
I
0.687
mgf004823m
Mimulus guttatus
mgf004823m
I
0.684
Eucgr.H02312
Eucalyptus grandis
Eucgr.H02312
I
0.684
PK00568.1
Cannabis sativa
PK00568.1
I
0.679
mgf007122m
Mimulus guttatus
mgf007122m
I
0.677
BGIOSGA003871
Oryza indica
BGIOSGA003871
I
0.674
LPERR01G18090
Leersia perrieri
LPERR01G18090
I
0.674
OB01G30760
Oryza brachyantha
OB01G30760
I
0.674
OBART01G21150
Oryza barthii
OBART01G21150
I
0.674
OLONG_011068
Oryza longistaminata
OLONG_011068
I
0.674
OMERI01G19490
Oryza meridionalis
OMERI01G19490
I
0.674
OMERI01G19510
Oryza meridionalis
OMERI01G19510
I
0.674
ONIVA01G23780
Oryza nivara
ONIVA01G23780
I
0.674
OPUNC01G21220
Oryza punctata
OPUNC01G21220
I
0.674
ORGLA01G0168300
Oryza glaberrima
ORGLA01G0168300
I
0.674
ORUFI01G23880
Oryza rufipogon
ORUFI01G23880
I
0.674
OS01G0589300
Oryza sativa
OS01G0589300
I
0.674
BRADI2G47820
Brachypodium distachyon
BRADI2G47820
I
0.673
GRMZM2G023667
Zea mays
GRMZM2G023667
I
0.673
GRMZM2G108424
Zea mays
GRMZM2G108424
I
0.673
LPERR01G24270
Leersia perrieri
LPERR01G24270
I
0.673
Sb03g032530
Sorghum bicolor
Sb03g032530
I
0.673
Traes_3AL_12B53AB09
Triticum aestivum
Traes_3AL_12B53AB09
I
0.673
TRAES3BF075800120CFD_g
Triticum aestivum
TRAES3BF075800120CFD_g
I
0.673
Pavir.Ea02570
Panicum virgatum
Pavir.Ea02570
I
0.673
Pavir.Eb02802
Panicum virgatum
Pavir.Eb02802
I
0.673
Bo3g178250
Brassica oleracea
Bo3g178250
I
0.672
Bra014227
Brassica rapa
Bra014227
I
0.672
GSMUA_Achr7G01090_001
Musa acuminata
GSMUA_Achr7G01090_001
I
0.670
BGIOSGA035841
Oryza indica
BGIOSGA035841
I
0.669
MTR_8g092810
Medicago truncatula
MTR_8g092810
I
0.669
OB12G25520
Oryza brachyantha
OB12G25520
I
0.669
OBART12G18680
Oryza barthii
OBART12G18680
I
0.669
OGLUM12G20330
Oryza glumaepatula
OGLUM12G20330
I
0.669
OLONG_008332
Oryza longistaminata
OLONG_008332
I
0.669
ONIVA12G17630
Oryza nivara
ONIVA12G17630
I
0.669
OPUNC12G16890
Oryza punctata
OPUNC12G16890
I
0.669
ORGLA12G0159400
Oryza glaberrima
ORGLA12G0159400
I
0.669
ORUFI12G20880
Oryza rufipogon
ORUFI12G20880
I
0.669
OS12G0613300
Oryza sativa
OS12G0613300
I
0.669
PRUPE_ppa016498mg
Prunus persica
PRUPE_ppa016498mg
I
0.669
Pm013309
Prunus mume
Pm013309
I
0.669
GSMUA_Achr4G08670_001
Musa acuminata
GSMUA_Achr4G08670_001
I
0.666
GSMUA_Achr4G09130_001
Musa acuminata
GSMUA_Achr4G09130_001
I
0.666
GSMUA_Achr8G24960_001
Musa acuminata
GSMUA_Achr8G24960_001
I
0.666
PRUPE_ppa007796mg
Prunus persica
PRUPE_ppa007796mg
I
0.666
Pm027209
Prunus mume
Pm027209
I
0.666
PDK_20s1888511g002
Phoenix dactylifera
PDK_20s1888511g002
I
0.666
Bo3g184590
Brassica oleracea
Bo3g184590
I
0.662
Bra030894
Brassica rapa
Bra030894
I
0.662