scaffold_101953.1 (Arabidopsis lyrata)
Myb/SANT

TF Information

Pfam ID Interpro ID Gene ID CIS-BP ID Sequence source Animal TF db
PF00249 (Myb_DNA-binding) IPR014778 scaffold_101953.1 T279366_2.00 Ensembl (2018-Dec-8) Link out

Directly determined binding motifs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
No direct experiments

Motifs from related TFs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
AT1G72740
M07033_2.00 		Arabidopsis thaliana
HMNAAACCCTAAWYY
RRWTTAGGGTTTNKD		 Dap-seq
OMalley et al.(2016)
AT1G72740_col_a 		0.876 0.936
AT1G72740
M07034_2.00 		Arabidopsis thaliana
HNWAACCCTAAHYHNNNHNNN
NNNDNNNDRDTTAGGGTTWND		 Dap-seq
OMalley et al.(2016)
AT1G72740_colamp_a 		0.876 0.936
OS01G0708000
M02326_2.00 		Oryza sativa
WRMCCTAVNN
NNBTAGGKYW		 PBM
Weirauch et al.(2014)
pTH8716 		0.837 0.809
TRB1
M01070_2.00 		Arabidopsis thaliana
WRMCCTAR
YTAGGKYW		 PBM
Sullivan et al.(2014)
pTH7117 		0.750 0.723
PK06103.1
M02348_2.00 		Cannabis sativa
TGCCCTAG
CTAGGGCA		 PBM
Weirauch et al.(2014)
pTH9649 		0.695 0.745
TRB2
M02314_2.00 		Arabidopsis thaliana
WRMCCTAR
YTAGGKYW		 PBM
Weirauch et al.(2014)
pTH7094 		0.662 0.723
TRB2
M01083_2.00 		Arabidopsis thaliana
HRMCCTAR
YTAGGKYD		 PBM
Sullivan et al.(2014)
pTH7260 		0.662 0.723
TRB2
M07157_2.00 		Arabidopsis thaliana
HHHHHNWWRCCCTAAWHHN
NDDWTTAGGGYWWNDDDDD		 Dap-seq
OMalley et al.(2016)
TBP3_col_a 		0.662 0.723
TRB2
M07158_2.00 		Arabidopsis thaliana
HVDHHHNWARCCCTAAHYH
DRDTTAGGGYTWNDDDHBD		 Dap-seq
OMalley et al.(2016)
TBP3_colamp_a 		0.662 0.723
For this family, TFs with SR scores > 0.661 will likely have a similar motif

DNA Binding Domains

Protein ID Domain From To Sequence
scaffold_101953.1 Myb 5 57

Links

Other Myb/SANT family TFs
Other Arabidopsis lyrata TFs

213 Related TFs

Name Species Gene ID Motif Evidence SR
Score		 Action
AT1G17520 Arabidopsis thaliana AT1G17520 I 0.909
Cagra.0824s0121 Capsella grandiflora Cagra.0824s0121 I 0.898
AT1G72740 Arabidopsis thaliana AT1G72740 D 0.876
Gorai.009G143000 Gossypium raimondii Gorai.009G143000 I 0.868
Bo8g067280 Brassica oleracea Bo8g067280 I 0.863
Bra016598 Brassica rapa Bra016598 I 0.863
Carubv10009890m.g Capsella rubella Carubv10009890m.g I 0.858
Ciclev10026245m.g Citrus clementina Ciclev10026245m.g I 0.858
orange1.1g023740m.g Citrus sinensis orange1.1g023740m.g I 0.858
Thhalv10008387m.g Eutrema salsugineum Thhalv10008387m.g I 0.858
Bo8g104830 Brassica oleracea Bo8g104830 I 0.853
TCM_029078 Theobroma cacao TCM_029078 I 0.850
29706.m001328 Ricinus communis 29706.m001328 I 0.850
cassava34930.m1 Manihot esculenta cassava34930.m1 I 0.850
evm.TU.supercontig_106.31 Carica papaya evm.TU.supercontig_106.31 I 0.850
Bostr.7128s0363 Boechera stricta Bostr.7128s0363 I 0.849
Bo5g023860 Brassica oleracea Bo5g023860 I 0.845
Bra025967 Brassica rapa Bra025967 I 0.845
fgenesh2_kg.2__1540__AT1G72740.1 Arabidopsis lyrata fgenesh2_kg.2__1540__AT1G72740.1 I 0.842
Cagra.1013s0027 Capsella grandiflora Cagra.1013s0027 I 0.842
Carubv10020636m.g Capsella rubella Carubv10020636m.g I 0.842
PRUPE_ppa016498mg Prunus persica PRUPE_ppa016498mg I 0.841
Pm013309 Prunus mume Pm013309 I 0.841
BGIOSGA004300 Oryza indica BGIOSGA004300 I 0.837
OB01G37330 Oryza brachyantha OB01G37330 I 0.837
OBART01G28260 Oryza barthii OBART01G28260 I 0.837
OGLUM01G32190 Oryza glumaepatula OGLUM01G32190 I 0.837
OLONG_008666 Oryza longistaminata OLONG_008666 I 0.837
OMERI05G07460 Oryza meridionalis OMERI05G07460 I 0.837
ONIVA01G32190 Oryza nivara ONIVA01G32190 I 0.837
OPUNC01G28080 Oryza punctata OPUNC01G28080 I 0.837
ORGLA01G0233700 Oryza glaberrima ORGLA01G0233700 I 0.837
ORUFI01G31370 Oryza rufipogon ORUFI01G31370 I 0.837
OS01G0708000 Oryza sativa OS01G0708000 D 0.837
Bra030992 Brassica rapa Bra030992 I 0.825
Bo6g116150 Brassica oleracea Bo6g116150 I 0.815
Bra016037 Brassica rapa Bra016037 I 0.815
GLYMA07G00930 Glycine max GLYMA07G00930 I 0.803
GLYMA08G20270 Glycine max GLYMA08G20270 I 0.803
Bostr.10273s0077 Boechera stricta Bostr.10273s0077 I 0.802
Cla012798 Citrullus lanatus Cla012798 I 0.798
Cucsa.341020 Cucumis sativus Cucsa.341020 I 0.798
Bo3g184590 Brassica oleracea Bo3g184590 I 0.793
Bra030894 Brassica rapa Bra030894 I 0.793
Thhalv10018950m.g Eutrema salsugineum Thhalv10018950m.g I 0.787
Ciclev10009173m.g Citrus clementina Ciclev10009173m.g I 0.776
orange1.1g024128m.g Citrus sinensis orange1.1g024128m.g I 0.776
chr2.LjT13P17.300.nd Lotus japonicus chr2.LjT13P17.300.nd I 0.775
LjSGA_029815.1 Lotus japonicus LjSGA_029815.1 I 0.775
SELMODRAFT_49296 Selaginella moellendorffii SELMODRAFT_49296 I 0.770
SELMODRAFT_49297 Selaginella moellendorffii SELMODRAFT_49297 I 0.770
29912.m005376 Ricinus communis 29912.m005376 I 0.768
evm.TU.supercontig_25.81 Carica papaya evm.TU.supercontig_25.81 I 0.767
chr3.LjT02L14.30.nd Lotus japonicus chr3.LjT02L14.30.nd I 0.767
LjSGA_016825.2 Lotus japonicus LjSGA_016825.2 I 0.767
PGSC0003DMG401025742 Solanum tuberosum PGSC0003DMG401025742 I 0.761
TRB1 Arabidopsis thaliana AT1G49950 D 0.750
Bo6g018740 Brassica oleracea Bo6g018740 I 0.750
Bra018818 Brassica rapa Bra018818 I 0.750
TRB1 Arabidopsis lyrata fgenesh2_kg.1__4077__AT1G49950.2 I 0.750
Bostr.26675s0174 Boechera stricta Bostr.26675s0174 I 0.750
Cagra.2826s0004 Capsella grandiflora Cagra.2826s0004 I 0.750
Carubv10009836m.g Capsella rubella Carubv10009836m.g I 0.750
Thhalv10011686m.g Eutrema salsugineum Thhalv10011686m.g I 0.750
Solyc07g040920.2 Solanum lycopersicum Solyc07g040920.2 I 0.749
BRADI2G47820 Brachypodium distachyon BRADI2G47820 I 0.748
LPERR01G24270 Leersia perrieri LPERR01G24270 I 0.748
Si002467m.g Setaria italica Si002467m.g I 0.748
Traes_3AL_12B53AB09 Triticum aestivum Traes_3AL_12B53AB09 I 0.748
TRAES3BF075800120CFD_g Triticum aestivum TRAES3BF075800120CFD_g I 0.748
Pavir.Ea02570 Panicum virgatum Pavir.Ea02570 I 0.748
MTR_2g099610 Medicago truncatula MTR_2g099610 I 0.746
Lus10027621.g Linum usitatissimum Lus10027621.g I 0.746
Eucgr.J02841 Eucalyptus grandis Eucgr.J02841 I 0.744
GSMUA_Achr4G08670_001 Musa acuminata GSMUA_Achr4G08670_001 I 0.743
GSMUA_Achr4G09130_001 Musa acuminata GSMUA_Achr4G09130_001 I 0.743
GSMUA_Achr8G24960_001 Musa acuminata GSMUA_Achr8G24960_001 I 0.743
TCM_042744 Theobroma cacao TCM_042744 I 0.743
POPTR_0006s14940 Populus trichocarpa POPTR_0006s14940 I 0.742
Eucgr.C00865 Eucalyptus grandis Eucgr.C00865 I 0.742
SapurV1A.0087s0150 Salix purpurea SapurV1A.0087s0150 I 0.742
SapurV1A.0108s0150 Salix purpurea SapurV1A.0108s0150 I 0.742
GSMUA_Achr2G13040_001 Musa acuminata GSMUA_Achr2G13040_001 I 0.740
OSTLU_27049 Ostreococcus lucimarinus OSTLU_27049 I 0.740
Aquca_001_00028 Aquilegia coerulea Aquca_001_00028 I 0.739
gw1.1.287.1 Physcomitrella patens gw1.1.287.1 I 0.736
gw1.176.27.1 Physcomitrella patens gw1.176.27.1 I 0.736
Cagra.1262s0035 Capsella grandiflora Cagra.1262s0035 I 0.735
Carubv10009763m.g Capsella rubella Carubv10009763m.g I 0.735
Lus10030935.g Linum usitatissimum Lus10030935.g I 0.735
Lus10040111.g Linum usitatissimum Lus10040111.g I 0.735
PRUPE_ppa007796mg Prunus persica PRUPE_ppa007796mg I 0.734
Pm027209 Prunus mume Pm027209 I 0.734
gene12682-v1.0-hybrid Fragaria vesca gene12682-v1.0-hybrid I 0.734
MDP0000265359 Malus domestica MDP0000265359 I 0.734
mgf007122m Mimulus guttatus mgf007122m I 0.733
PK00568.1 Cannabis sativa PK00568.1 I 0.731
GRMZM2G108424 Zea mays GRMZM2G108424 I 0.730
Sb03g032530 Sorghum bicolor Sb03g032530 I 0.730
Pavir.Eb02802 Panicum virgatum Pavir.Eb02802 I 0.730
PGSC0003DMG400023131 Solanum tuberosum PGSC0003DMG400023131 I 0.728
Solyc11g044320.1 Solanum lycopersicum Solyc11g044320.1 I 0.728
Ca_02722 Cicer arietinum Ca_02722 I 0.725
VIT_11s0016g01890 Vitis vinifera VIT_11s0016g01890 I 0.723
cassava43824.valid.m1 Manihot esculenta cassava43824.valid.m1 I 0.723
GLYMA09G03390 Glycine max GLYMA09G03390 I 0.722
GLYMA15G14320 Glycine max GLYMA15G14320 I 0.722
GSMUA_Achr6G30000_001 Musa acuminata GSMUA_Achr6G30000_001 I 0.722
GSMUA_Achr6G31260_001 Musa acuminata GSMUA_Achr6G31260_001 I 0.722
gene25445-v1.0-hybrid Fragaria vesca gene25445-v1.0-hybrid I 0.722
POPTR_0018s07040 Populus trichocarpa POPTR_0018s07040 I 0.720
BRADI2G42240 Brachypodium distachyon BRADI2G42240 I 0.715
Si002403m.g Setaria italica Si002403m.g I 0.715
gene07496-v1.0-hybrid Fragaria vesca gene07496-v1.0-hybrid I 0.715
Pavir.Ea02064 Panicum virgatum Pavir.Ea02064 I 0.715
Pavir.J27218 Panicum virgatum Pavir.J27218 I 0.715
AMTR_s00007p00193000 Amborella trichopoda AMTR_s00007p00193000 I 0.710
Bo5g077530 Brassica oleracea Bo5g077530 I 0.710
Bra039650 Brassica rapa Bra039650 I 0.710
mgf009594m Mimulus guttatus mgf009594m I 0.710
PDK_20s1888511g002 Phoenix dactylifera PDK_20s1888511g002 I 0.709
PRUPE_ppa011492mg Prunus persica PRUPE_ppa011492mg I 0.706
TCM_000807 Theobroma cacao TCM_000807 I 0.706
Pm021139 Prunus mume Pm021139 I 0.706
Ciclev10026089m.g Citrus clementina Ciclev10026089m.g I 0.706
Gorai.003G030800 Gossypium raimondii Gorai.003G030800 I 0.706
Gorai.007G224200 Gossypium raimondii Gorai.007G224200 I 0.706
orange1.1g020653m.g Citrus sinensis orange1.1g020653m.g I 0.706
GRMZM2G087817 Zea mays GRMZM2G087817 I 0.705
GRMZM2G136887 Zea mays GRMZM2G136887 I 0.705
Sb03g026470 Sorghum bicolor Sb03g026470 I 0.705
Traes_3AL_CF481F6AC Triticum aestivum Traes_3AL_CF481F6AC I 0.705
TRAES3BF118300070CFD_g Triticum aestivum TRAES3BF118300070CFD_g I 0.705
TRIUR3_08672 Triticum urartu TRIUR3_08672 I 0.705
mgf011386m Mimulus guttatus mgf011386m I 0.704
BGIOSGA003871 Oryza indica BGIOSGA003871 I 0.699
LPERR01G18090 Leersia perrieri LPERR01G18090 I 0.699
OBART01G21150 Oryza barthii OBART01G21150 I 0.699
OLONG_011068 Oryza longistaminata OLONG_011068 I 0.699
OMERI01G19490 Oryza meridionalis OMERI01G19490 I 0.699
OMERI01G19510 Oryza meridionalis OMERI01G19510 I 0.699
ONIVA01G23780 Oryza nivara ONIVA01G23780 I 0.699
OPUNC01G21220 Oryza punctata OPUNC01G21220 I 0.699
ORGLA01G0168300 Oryza glaberrima ORGLA01G0168300 I 0.699
ORUFI01G23880 Oryza rufipogon ORUFI01G23880 I 0.699
OS01G0589300 Oryza sativa OS01G0589300 I 0.699
EuGene.1300010252 Ostreococcus RCC809 EuGene.1300010252 I 0.698
Thhalv10012087m.g Eutrema salsugineum Thhalv10012087m.g I 0.698
TCM_037620 Theobroma cacao TCM_037620 I 0.697
Gorai.001G013000 Gossypium raimondii Gorai.001G013000 I 0.697
GLYMA01G40220 Glycine max GLYMA01G40220 I 0.695
GLYMA05G22500 Glycine max GLYMA05G22500 I 0.695
GLYMA11G05070 Glycine max GLYMA11G05070 I 0.695
GLYMA17G17370 Glycine max GLYMA17G17370 I 0.695
MTR_4g097130 Medicago truncatula MTR_4g097130 I 0.695
POPTR_0001s30000 Populus trichocarpa POPTR_0001s30000 I 0.695
POPTR_0009s09020 Populus trichocarpa POPTR_0009s09020 I 0.695
PRUPE_ppa009220mg Prunus persica PRUPE_ppa009220mg I 0.695
Ca_02232 Cicer arietinum Ca_02232 I 0.695
Ca_09355 Cicer arietinum Ca_09355 I 0.695
Cla014248 Citrullus lanatus Cla014248 I 0.695
Pm002374 Prunus mume Pm002374 I 0.695
29661.m000926 Ricinus communis 29661.m000926 I 0.695
29812.m000204 Ricinus communis 29812.m000204 I 0.695
cassava19326.valid.m1 Manihot esculenta cassava19326.valid.m1 I 0.695
cassava7508.valid.m1 Manihot esculenta cassava7508.valid.m1 I 0.695
Cucsa.103240 Cucumis sativus Cucsa.103240 I 0.695
Eucgr.I01053 Eucalyptus grandis Eucgr.I01053 I 0.695
Lus10014653.g Linum usitatissimum Lus10014653.g I 0.695
Lus10033775.g Linum usitatissimum Lus10033775.g I 0.695
MDP0000239354 Malus domestica MDP0000239354 I 0.695
SapurV1A.0005s0260 Salix purpurea SapurV1A.0005s0260 I 0.695
SapurV1A.0019s0460 Salix purpurea SapurV1A.0019s0460 I 0.695
PK06103.1 Cannabis sativa PK06103.1 D 0.695
LjT25P15.150.nd Lotus japonicus LjT25P15.150.nd I 0.695
PDK_20s1413011g001 Phoenix dactylifera PDK_20s1413011g001 I 0.695
PDK_20s1467521g002 Phoenix dactylifera PDK_20s1467521g002 I 0.695
MTR_8g018410 Medicago truncatula MTR_8g018410 I 0.694
Solyc01g106940.2 Solanum lycopersicum Solyc01g106940.2 I 0.691
GRMZM2G023667 Zea mays GRMZM2G023667 I 0.690
EuGene.0000030935 Micromonas pusilla EuGene.0000030935 I 0.690
MTR_2g031870 Medicago truncatula MTR_2g031870 I 0.688
Ca_08043 Cicer arietinum Ca_08043 I 0.688
SELMODRAFT_443975 Selaginella moellendorffii SELMODRAFT_443975 I 0.686
SELMODRAFT_49312 Selaginella moellendorffii SELMODRAFT_49312 I 0.686
Eucgr.H02312 Eucalyptus grandis Eucgr.H02312 I 0.685
Ca_10058 Cicer arietinum Ca_10058 I 0.683
MTR_8g092810 Medicago truncatula MTR_8g092810 I 0.680
PGSC0003DMG402003328 Solanum tuberosum PGSC0003DMG402003328 I 0.679
Solyc02g064630.2 Solanum lycopersicum Solyc02g064630.2 I 0.679
MTR_0095s0040 Medicago truncatula MTR_0095s0040 I 0.678
MDP0000234807 Malus domestica MDP0000234807 I 0.678
BRADI4G01770 Brachypodium distachyon BRADI4G01770 I 0.673
MLOC_10278 Hordeum vulgare MLOC_10278 I 0.673
Traes_5AS_8756ECB5A Triticum aestivum Traes_5AS_8756ECB5A I 0.673
Traes_5BS_EB206B8BC Triticum aestivum Traes_5BS_EB206B8BC I 0.673
Traes_5DS_3EE830A43 Triticum aestivum Traes_5DS_3EE830A43 I 0.673
TRIUR3_10613 Triticum urartu TRIUR3_10613 I 0.673
Bo1g081300 Brassica oleracea Bo1g081300 I 0.672
Bra029978 Brassica rapa Bra029978 I 0.672
TRB3 Arabidopsis lyrata fgenesh2_kg.5__1337__AT3G49850.1 I 0.672
Bostr.0568s0184 Boechera stricta Bostr.0568s0184 I 0.672
Bostr.6864s0256 Boechera stricta Bostr.6864s0256 I 0.672
Cagra.0342s0046 Capsella grandiflora Cagra.0342s0046 I 0.672
Cagra.4491s0006 Capsella grandiflora Cagra.4491s0006 I 0.672
Carubv10017722m.g Capsella rubella Carubv10017722m.g I 0.672
Carubv10026874m.g Capsella rubella Carubv10026874m.g I 0.672
Thhalv10004691m.g Eutrema salsugineum Thhalv10004691m.g I 0.672
Thhalv10010562m.g Eutrema salsugineum Thhalv10010562m.g I 0.672
MTR_1g041765 Medicago truncatula MTR_1g041765 I 0.667
OB01G30760 Oryza brachyantha OB01G30760 I 0.665
TRB2 Arabidopsis thaliana AT5G67580 D 0.662
TRB2 Arabidopsis lyrata fgenesh1_pm.C_scaffold_8002157 I 0.662