Bra029978 (Brassica rapa)
Myb/SANT

TF Information

Pfam ID Interpro ID Gene ID CIS-BP ID Sequence source Animal TF db
PF00249 (Myb_DNA-binding) IPR014778 Bra029978 T268047_2.00 Ensembl (2018-Dec-8) Link out

Directly determined binding motifs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
No direct experiments

Motifs from related TFs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
TRB2
M02314_2.00 		Arabidopsis thaliana
WRMCCTAR
YTAGGKYW		 PBM
Weirauch et al.(2014)
pTH7094 		0.847 0.913
TRB2
M01083_2.00 		Arabidopsis thaliana
HRMCCTAR
YTAGGKYD		 PBM
Sullivan et al.(2014)
pTH7260 		0.847 0.913
TRB2
M07157_2.00 		Arabidopsis thaliana
HHHHHNWWRCCCTAAWHHN
NDDWTTAGGGYWWNDDDDD		 Dap-seq
OMalley et al.(2016)
TBP3_col_a 		0.847 0.913
TRB2
M07158_2.00 		Arabidopsis thaliana
HVDHHHNWARCCCTAAHYH
DRDTTAGGGYTWNDDDHBD		 Dap-seq
OMalley et al.(2016)
TBP3_colamp_a 		0.847 0.913
TRB1
M01070_2.00 		Arabidopsis thaliana
WRMCCTAR
YTAGGKYW		 PBM
Sullivan et al.(2014)
pTH7117 		0.741 0.804
PK06103.1
M02348_2.00 		Cannabis sativa
TGCCCTAG
CTAGGGCA		 PBM
Weirauch et al.(2014)
pTH9649 		0.728 0.848
OS01G0708000
M02326_2.00 		Oryza sativa
WRMCCTAVNN
NNBTAGGKYW		 PBM
Weirauch et al.(2014)
pTH8716 		0.709 0.804
For this family, TFs with SR scores > 0.661 will likely have a similar motif

DNA Binding Domains

Protein ID Domain From To Sequence
Bra029978.1-P Myb 5 56

Links

Other Myb/SANT family TFs
Other Brassica rapa TFs

201 Related TFs

Name Species Gene ID Motif Evidence SR
Score		 Action
Bo1g081300 Brassica oleracea Bo1g081300 I 0.909
TRB3 Arabidopsis lyrata fgenesh2_kg.5__1337__AT3G49850.1 I 0.875
Bostr.6864s0256 Boechera stricta Bostr.6864s0256 I 0.875
Cagra.4491s0006 Capsella grandiflora Cagra.4491s0006 I 0.875
Carubv10017722m.g Capsella rubella Carubv10017722m.g I 0.875
Thhalv10010562m.g Eutrema salsugineum Thhalv10010562m.g I 0.875
Bostr.0568s0184 Boechera stricta Bostr.0568s0184 I 0.857
Cagra.0342s0046 Capsella grandiflora Cagra.0342s0046 I 0.857
Carubv10026874m.g Capsella rubella Carubv10026874m.g I 0.857
Thhalv10004691m.g Eutrema salsugineum Thhalv10004691m.g I 0.857
POPTR_0007s14920 Populus trichocarpa POPTR_0007s14920 I 0.851
TRB2 Arabidopsis thaliana AT5G67580 D 0.847
TRB2 Arabidopsis lyrata fgenesh1_pm.C_scaffold_8002157 I 0.847
TCM_000807 Theobroma cacao TCM_000807 I 0.836
Ciclev10026089m.g Citrus clementina Ciclev10026089m.g I 0.836
Gorai.003G030800 Gossypium raimondii Gorai.003G030800 I 0.836
Gorai.007G224200 Gossypium raimondii Gorai.007G224200 I 0.836
orange1.1g020653m.g Citrus sinensis orange1.1g020653m.g I 0.836
TRB3 Arabidopsis thaliana AT3G49850 I 0.835
Bo3g096520 Brassica oleracea Bo3g096520 I 0.817
Bo9g019040 Brassica oleracea Bo9g019040 I 0.817
Bra024438 Brassica rapa Bra024438 I 0.817
Bra037837 Brassica rapa Bra037837 I 0.817
Bra037839 Brassica rapa Bra037839 I 0.817
29661.m000926 Ricinus communis 29661.m000926 I 0.817
cassava37744.valid.m1 Manihot esculenta cassava37744.valid.m1 I 0.817
cassava7508.valid.m1 Manihot esculenta cassava7508.valid.m1 I 0.817
gene12682-v1.0-hybrid Fragaria vesca gene12682-v1.0-hybrid I 0.805
Lus10011546.g Linum usitatissimum Lus10011546.g I 0.796
Lus10019260.g Linum usitatissimum Lus10019260.g I 0.796
VIT_11s0016g01890 Vitis vinifera VIT_11s0016g01890 I 0.794
PK00568.1 Cannabis sativa PK00568.1 I 0.794
POPTR_0006s14940 Populus trichocarpa POPTR_0006s14940 I 0.785
PRUPE_ppa007796mg Prunus persica PRUPE_ppa007796mg I 0.785
Pm027209 Prunus mume Pm027209 I 0.785
SapurV1A.0087s0150 Salix purpurea SapurV1A.0087s0150 I 0.785
SapurV1A.0108s0150 Salix purpurea SapurV1A.0108s0150 I 0.785
cassava43824.valid.m1 Manihot esculenta cassava43824.valid.m1 I 0.780
BGIOSGA003871 Oryza indica BGIOSGA003871 I 0.779
LPERR01G18090 Leersia perrieri LPERR01G18090 I 0.779
OB01G30760 Oryza brachyantha OB01G30760 I 0.779
OBART01G21150 Oryza barthii OBART01G21150 I 0.779
OLONG_011068 Oryza longistaminata OLONG_011068 I 0.779
OMERI01G19490 Oryza meridionalis OMERI01G19490 I 0.779
OMERI01G19510 Oryza meridionalis OMERI01G19510 I 0.779
ONIVA01G23780 Oryza nivara ONIVA01G23780 I 0.779
OPUNC01G21220 Oryza punctata OPUNC01G21220 I 0.779
ORGLA01G0168300 Oryza glaberrima ORGLA01G0168300 I 0.779
ORUFI01G23880 Oryza rufipogon ORUFI01G23880 I 0.779
OS01G0589300 Oryza sativa OS01G0589300 I 0.779
POPTR_0014s01010 Populus trichocarpa POPTR_0014s01010 I 0.778
SapurV1A.0235s0100 Salix purpurea SapurV1A.0235s0100 I 0.778
SapurV1A.1368s0050 Salix purpurea SapurV1A.1368s0050 I 0.778
Cla006547 Citrullus lanatus Cla006547 I 0.775
Cucsa.298390 Cucumis sativus Cucsa.298390 I 0.775
Aquca_004_00181 Aquilegia coerulea Aquca_004_00181 I 0.775
29912.m005376 Ricinus communis 29912.m005376 I 0.771
Ciclev10009173m.g Citrus clementina Ciclev10009173m.g I 0.771
orange1.1g024128m.g Citrus sinensis orange1.1g024128m.g I 0.771
MTR_8g494240 Medicago truncatula MTR_8g494240 I 0.765
POPTR_0018s07040 Populus trichocarpa POPTR_0018s07040 I 0.763
MDP0000234807 Malus domestica MDP0000234807 I 0.762
Aquca_001_00028 Aquilegia coerulea Aquca_001_00028 I 0.760
AMTR_s00036p00166880 Amborella trichopoda AMTR_s00036p00166880 I 0.759
VIT_00s1311g00020 Vitis vinifera VIT_00s1311g00020 I 0.755
VIT_07s0151g00480 Vitis vinifera VIT_07s0151g00480 I 0.755
Ca_08043 Cicer arietinum Ca_08043 I 0.755
PGSC0003DMG402003328 Solanum tuberosum PGSC0003DMG402003328 I 0.753
Solyc02g064630.2 Solanum lycopersicum Solyc02g064630.2 I 0.753
PGSC0003DMG401025742 Solanum tuberosum PGSC0003DMG401025742 I 0.752
PRUPE_ppa011492mg Prunus persica PRUPE_ppa011492mg I 0.752
Pm021139 Prunus mume Pm021139 I 0.752
Eucgr.C00865 Eucalyptus grandis Eucgr.C00865 I 0.751
MDP0000265359 Malus domestica MDP0000265359 I 0.751
Lus10027621.g Linum usitatissimum Lus10027621.g I 0.749
POPTR_0001s30000 Populus trichocarpa POPTR_0001s30000 I 0.748
SapurV1A.0005s0260 Salix purpurea SapurV1A.0005s0260 I 0.748
PDK_20s1467521g002 Phoenix dactylifera PDK_20s1467521g002 I 0.748
MTR_0095s0040 Medicago truncatula MTR_0095s0040 I 0.745
mgf011386m Mimulus guttatus mgf011386m I 0.742
TRB1 Arabidopsis thaliana AT1G49950 D 0.741
Bo6g018740 Brassica oleracea Bo6g018740 I 0.741
Bra018818 Brassica rapa Bra018818 I 0.741
TRB1 Arabidopsis lyrata fgenesh2_kg.1__4077__AT1G49950.2 I 0.741
POPTR_0009s09020 Populus trichocarpa POPTR_0009s09020 I 0.741
TCM_007242 Theobroma cacao TCM_007242 I 0.741
TRB1 Vitis vinifera VIT_03s0091g01030 I 0.741
29812.m000204 Ricinus communis 29812.m000204 I 0.741
cassava19326.valid.m1 Manihot esculenta cassava19326.valid.m1 I 0.741
Bostr.26675s0174 Boechera stricta Bostr.26675s0174 I 0.741
Cagra.2826s0004 Capsella grandiflora Cagra.2826s0004 I 0.741
Carubv10009836m.g Capsella rubella Carubv10009836m.g I 0.741
Ciclev10028926m.g Citrus clementina Ciclev10028926m.g I 0.741
Eucgr.I01053 Eucalyptus grandis Eucgr.I01053 I 0.741
Gorai.005G230800 Gossypium raimondii Gorai.005G230800 I 0.741
Lus10014653.g Linum usitatissimum Lus10014653.g I 0.741
Lus10033775.g Linum usitatissimum Lus10033775.g I 0.741
orange1.1g022048m.g Citrus sinensis orange1.1g022048m.g I 0.741
SapurV1A.0019s0460 Salix purpurea SapurV1A.0019s0460 I 0.741
Thhalv10011686m.g Eutrema salsugineum Thhalv10011686m.g I 0.741
PK19870.1 Cannabis sativa PK19870.1 I 0.741
PDK_20s1413011g001 Phoenix dactylifera PDK_20s1413011g001 I 0.735
SELMODRAFT_443975 Selaginella moellendorffii SELMODRAFT_443975 I 0.734
SELMODRAFT_49312 Selaginella moellendorffii SELMODRAFT_49312 I 0.734
PGSC0003DMG400023131 Solanum tuberosum PGSC0003DMG400023131 I 0.733
Solyc11g044320.1 Solanum lycopersicum Solyc11g044320.1 I 0.733
GSMUA_Achr2G13040_001 Musa acuminata GSMUA_Achr2G13040_001 I 0.731
mgf000125m Mimulus guttatus mgf000125m I 0.731
mgf010975m Mimulus guttatus mgf010975m I 0.731
AMTR_s00007p00193000 Amborella trichopoda AMTR_s00007p00193000 I 0.730
GLYMA01G40220 Glycine max GLYMA01G40220 I 0.728
GLYMA05G22500 Glycine max GLYMA05G22500 I 0.728
GLYMA11G05070 Glycine max GLYMA11G05070 I 0.728
GLYMA17G17370 Glycine max GLYMA17G17370 I 0.728
MTR_4g097130 Medicago truncatula MTR_4g097130 I 0.728
PRUPE_ppa009220mg Prunus persica PRUPE_ppa009220mg I 0.728
Ca_02232 Cicer arietinum Ca_02232 I 0.728
Ca_09355 Cicer arietinum Ca_09355 I 0.728
Cla014248 Citrullus lanatus Cla014248 I 0.728
Pm002374 Prunus mume Pm002374 I 0.728
Cucsa.103240 Cucumis sativus Cucsa.103240 I 0.728
MDP0000239354 Malus domestica MDP0000239354 I 0.728
PK06103.1 Cannabis sativa PK06103.1 D 0.728
LjT25P15.150.nd Lotus japonicus LjT25P15.150.nd I 0.728
gene05764-v1.0-hybrid Fragaria vesca gene05764-v1.0-hybrid I 0.726
Lus10012092.g Linum usitatissimum Lus10012092.g I 0.725
Lus10025203.g Linum usitatissimum Lus10025203.g I 0.725
Lus10030935.g Linum usitatissimum Lus10030935.g I 0.725
Lus10040111.g Linum usitatissimum Lus10040111.g I 0.725
GLYMA09G03390 Glycine max GLYMA09G03390 I 0.721
GLYMA15G14320 Glycine max GLYMA15G14320 I 0.721
GSMUA_Achr6G31260_001 Musa acuminata GSMUA_Achr6G31260_001 I 0.721
MTR_1g041765 Medicago truncatula MTR_1g041765 I 0.721
MTR_2g031870 Medicago truncatula MTR_2g031870 I 0.721
gene25445-v1.0-hybrid Fragaria vesca gene25445-v1.0-hybrid I 0.721
Eucgr.H02312 Eucalyptus grandis Eucgr.H02312 I 0.718
GSMUA_Achr6G30000_001 Musa acuminata GSMUA_Achr6G30000_001 I 0.715
gene07496-v1.0-hybrid Fragaria vesca gene07496-v1.0-hybrid I 0.715
mgf004823m Mimulus guttatus mgf004823m I 0.711
BGIOSGA004300 Oryza indica BGIOSGA004300 I 0.709
BRADI2G47820 Brachypodium distachyon BRADI2G47820 I 0.709
GRMZM2G108424 Zea mays GRMZM2G108424 I 0.709
LPERR01G24270 Leersia perrieri LPERR01G24270 I 0.709
OB01G37330 Oryza brachyantha OB01G37330 I 0.709
OBART01G28260 Oryza barthii OBART01G28260 I 0.709
OGLUM01G32190 Oryza glumaepatula OGLUM01G32190 I 0.709
OLONG_008666 Oryza longistaminata OLONG_008666 I 0.709
OMERI05G07460 Oryza meridionalis OMERI05G07460 I 0.709
ONIVA01G32190 Oryza nivara ONIVA01G32190 I 0.709
OPUNC01G28080 Oryza punctata OPUNC01G28080 I 0.709
ORGLA01G0233700 Oryza glaberrima ORGLA01G0233700 I 0.709
ORUFI01G31370 Oryza rufipogon ORUFI01G31370 I 0.709
OS01G0708000 Oryza sativa OS01G0708000 D 0.709
Sb03g032530 Sorghum bicolor Sb03g032530 I 0.709
Traes_3AL_12B53AB09 Triticum aestivum Traes_3AL_12B53AB09 I 0.709
TRAES3BF075800120CFD_g Triticum aestivum TRAES3BF075800120CFD_g I 0.709
Pavir.Ea02570 Panicum virgatum Pavir.Ea02570 I 0.709
Pavir.Eb02802 Panicum virgatum Pavir.Eb02802 I 0.709
OSTLU_27049 Ostreococcus lucimarinus OSTLU_27049 I 0.705
evm.TU.supercontig_25.81 Carica papaya evm.TU.supercontig_25.81 I 0.705
mgf009594m Mimulus guttatus mgf009594m I 0.702
MTR_8g092810 Medicago truncatula MTR_8g092810 I 0.700
BRADI4G01770 Brachypodium distachyon BRADI4G01770 I 0.699
MLOC_10278 Hordeum vulgare MLOC_10278 I 0.699
Traes_5AS_8756ECB5A Triticum aestivum Traes_5AS_8756ECB5A I 0.699
Traes_5BS_EB206B8BC Triticum aestivum Traes_5BS_EB206B8BC I 0.699
Traes_5DS_3EE830A43 Triticum aestivum Traes_5DS_3EE830A43 I 0.699
TRIUR3_10613 Triticum urartu TRIUR3_10613 I 0.699
GSMUA_Achr7G01090_001 Musa acuminata GSMUA_Achr7G01090_001 I 0.697
Solyc07g040920.2 Solanum lycopersicum Solyc07g040920.2 I 0.696
Bo5g077530 Brassica oleracea Bo5g077530 I 0.695
Bra039650 Brassica rapa Bra039650 I 0.695
Aquca_060_00026 Aquilegia coerulea Aquca_060_00026 I 0.693
MTR_5g015340 Medicago truncatula MTR_5g015340 I 0.688
gw1.1.287.1 Physcomitrella patens gw1.1.287.1 I 0.687
gw1.176.27.1 Physcomitrella patens gw1.176.27.1 I 0.687
BRADI2G42240 Brachypodium distachyon BRADI2G42240 I 0.684
GSMUA_Achr4G08670_001 Musa acuminata GSMUA_Achr4G08670_001 I 0.684
GSMUA_Achr4G09130_001 Musa acuminata GSMUA_Achr4G09130_001 I 0.684
GSMUA_Achr8G24960_001 Musa acuminata GSMUA_Achr8G24960_001 I 0.684
PDK_20s1888511g002 Phoenix dactylifera PDK_20s1888511g002 I 0.684
Solyc01g106940.2 Solanum lycopersicum Solyc01g106940.2 I 0.682
SELMODRAFT_413266 Selaginella moellendorffii SELMODRAFT_413266 I 0.676
SELMODRAFT_426759 Selaginella moellendorffii SELMODRAFT_426759 I 0.676
Bo7g099090 Brassica oleracea Bo7g099090 I 0.675
Bra012919 Brassica rapa Bra012919 I 0.675
Si002467m.g Setaria italica Si002467m.g I 0.675
Traes_3AL_CF481F6AC Triticum aestivum Traes_3AL_CF481F6AC I 0.675
TRAES3BF118300070CFD_g Triticum aestivum TRAES3BF118300070CFD_g I 0.675
TRIUR3_08672 Triticum urartu TRIUR3_08672 I 0.675
AT1G17520 Arabidopsis thaliana AT1G17520 I 0.672
scaffold_101953.1 Arabidopsis lyrata scaffold_101953.1 I 0.672
chr2.LjT13P17.300.nd Lotus japonicus chr2.LjT13P17.300.nd I 0.672
chr3.LjT02L14.30.nd Lotus japonicus chr3.LjT02L14.30.nd I 0.672
LjSGA_016825.2 Lotus japonicus LjSGA_016825.2 I 0.672
LjSGA_029815.1 Lotus japonicus LjSGA_029815.1 I 0.672
GRMZM2G023667 Zea mays GRMZM2G023667 I 0.670
SELMODRAFT_49296 Selaginella moellendorffii SELMODRAFT_49296 I 0.665
SELMODRAFT_49297 Selaginella moellendorffii SELMODRAFT_49297 I 0.665
EuGene.0500010080 Micromonas sp RCC299 EuGene.0500010080 I 0.665
EuGene.0000030935 Micromonas pusilla EuGene.0000030935 I 0.662